Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01908 ATGAAGTTTATGAGTCACATTGCGCAATGGAGAAGCGGTGCGAAGGAAGCATTAGACCGCACAGCGATAATCGCGAAGTTCCTTTGTTGCCTTCACTTCACCGACACCTACCTCTGTTCTCCAACTCACGTGTATGGTCCTAGTATGCTCCCTACCCTAAATATCGCCGGCGACGTTGTTCTTGTCGAACACCTCTCTCCACTTCTTGGGAACGTTGGTTATGGTGATTTGGTTCTTGTTCGCTCCCCTTTGAACCCTAATCGGAACTTGACAAAGAGAATTGTTGCTATGGAAGGGGATACTGTTACTTACTTTGACCCTTTGCATTCTGATTCCGATCGAATTGCTGTGGTGTGTGTGCTTAATGGTGCCAAAGGGGCATGTTTGGATTCAAGGAGATAA 402 0.4677 MKFMSHIAQWRSGAKEALDRTAIIAKFLCCLHFTDTYLCSPTHVYGPSMLPTLNIAGDVVLVEHLSPLLGNVGYGDLVLVRSPLNPNRNLTKRIVAMEGDTVTYFDPLHSDSDRIAVVCVLNGAKGACLDSRR 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01908 133 SUPERFAMILY LexA/Signal peptidase 36 105 IPR036286 -
Car01g01908 133 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 5 118 - -
Car01g01908 133 TIGRFAM sigpep_I_bact: signal peptidase I 23 104 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car01g01908 133 Gene3D Umud Fragment, subunit A 35 133 - -
Car01g01908 133 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 5 118 - -
Car01g01908 133 CDD S26_SPase_I 40 100 IPR019533 GO:0004252|GO:0006465
Car01g01908 133 Pfam Signal peptidase, peptidase S26 24 105 IPR019533 GO:0004252|GO:0006465
Car01g01908 133 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car01g01908 133 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01908 Car-Chr1 43601729 43605570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01908 49 118 MADS-box Gene Family AT1G29960 39.437 3.89e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01908 K09647 - csin:114274489 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01908 01 43601729 43605570 Car01g01908 01 43601729 43605570 ECH