Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01858 ATGATGTTGTTGTCAGGTTTCAGCTCCAAAAATTGCTTTTTTATTTACATGATGCTAATGTTTCACCTTTGCATCTTCTTTGTAATTTCAATCAATGAAGAGGGTTCAAATCTTTTGAAGTTCAAAGCTTCACTTTTGGACTCAAAAAACAATCTTTTTAACTGGAATCCTTCTGATTCAACTCCTTGTAATTGGACTGGTGTTTATTGCACTGATTCGTTGGTAACTTCTGTTAAACTTTACCATTTCAATCTCTCTGGTAATTTGTCACCTACAATCTGTAACCTTCCATGGTTAGTTGAATTGAATCTCTCTAAAAACTTCATCTCAGGTTCAATTCCTAAAGCTTTTGTTAACTGTGAAAAGTTAGAAATTTTAGACCTTTGTACAAATAGGCTTCATGGTCAACTTCTAAAATCTATTTGGAAAATCAAAACACTTCAAAAACTTTACCTTTGTGAAAACTACATGTATGGTGAAGTTTCAGAAGAGATTGGAAATTTAACTTCACTTGAAGAGTTAGTGATTTATAGCAACAATTTAACAGGAAACATTCCAACATCAATAAAAAATTTGAAGAAGCTTAGAGTTATAAGAGCTGGTTTGAATTTTTTGTCAGGAAACTTACCTTCAGAAATCAGTGAATGTGAGAGTTTAGAGATATTAGGTTTAGCACAGAATCAGTTACAAGGTTCTATTCCAAAGGAGCTTCAAAAGCTTCAGAAACTAACCAATTTGATTCTATGGCAAAACTCATTTTCTGGTGAGCTTCCACCTGAGATTGGAAACATTAGTAGCCTTCAGTTGATTGCTTTGCATCAAAATTCATTGAGTGGCGATATTCCGAAGGATCTCGGCCGGTTATCACAGTTGAAGAAGTTGTACATGTATACTAACCAGTTGAACGGGACAATTCCAATTGAGCTAGGAAACTGTACTAATGCTGTTGAGATTGATCTATCTGAAAACCATTTGATTGGAACCATTCCTAAAGAGTTAGGTGAAATCTCTAATCTTAGCTTGCTTCATTTATTTGAAAACAATTTGCAGGGTCATATTCCAAAGGAGCTTGGAAATTTGAGGCTGCTAAGGAATTTAGATTTGTCATTGAATAACTTAACAGGTAGAATTCCATTGGAGTTTCAAAACCTTGAATTCATGGAGGATTTGCAGCTATTTGATAATCAACTTGAAGGTGTGATTCCACCTCATCTTGGAGCTGTTAAGAACCTTACTATTCTTGATATCTCTTCGAATAATCTCGTTGGTATGATACCAAGACATCTTTGCGAATATCAGAAGCTGCAATTTCTTAGCCTCGGATCGAATAGGCTTTTCGGTAATATTCCTTATAGTTTGAAAACTTGTAAGTCACTTGTGCAGTTGATGCTTGGAGACAACCTTTTGACAGGAAGTTTACCTGTTGAATTTTATGAGCTTCATAATCTTACCGCACTCGAACTTCATCAAAACCAATTCTCAGGACTAATTAGTCGTGGGATCGGTCAATTAAAGAATTTGGAGAGACTTCATTTGTCAGATAACTTTTTTTCTGGTTATCTACCTTTTGAGATTGGAAACTTGGCACAGCTTGTCACGTTCAATGTTTCATCGAATCGATTCGGAGGAAGCATTCCGAACGAGTTGGGAAACTGTGCGAGGCTGCAGAGGCTTGATCTCAGCAGGGACAAGAACAAGTTTTCTGGTATGCTGTCGAATTCAATTGGAAATCTTGTGAATTTGGAGCTACTAAAAGTTTCTGATAACATGCTTTTTGGAGAAATACCAGGAACTTTGGGAGAACTTATTCGGCTAACCGATTTGGAGCTAGGCGGAAATAGGTTTACAGGAAGCATTTCTTTTCATTTTGGAAGACTGTCTGCTCTTCAGATAGCACTTAATCTGAGTCACAACAATCTTTCTGGTACAATTCCTGATAGCTTAGGAAGCCTGCAAATGTTGGAATCACTTTACTTGAATGATAATCAACTTTTCGGAGAAATTCCTTCATCAATTGGTGACTTGCCTAGTCTTTTAGTATGCAATGTATCTAACAATAAGCTCACAGGAACTGTTCCTGACACAACTACATTTAGAAAGATGGATTTAACGAATTTTGCCGGGAATAATGGTTTGTGCCGCATAGGTACTAATCACTGTCATCCATCTCTAGCTTCATCTCATCGTGAAAAGGCGACGAAAAACGGTTTATCAAGGGAAAAGATAGTTAGCATTGTTTCTGGTGTAGTTGGTTTTGTTTCTCTTATTTTCATTGTGATTATATGTTGGACTATGAAGCGACACCGGAGCTCATCTTTTGTTTCAATCGAAGAAGAACAAACAAAGCCTCATGTTCTTGATAACTATTACTTTCCGAAAGAAGGCTTCACATATCAGGATCTTTTGGAAGCCACTGGAAATTTTTCAGAATCTGAAGTTATAGGAAGAGGAGCTTGTGGAACTGTCTACAAAGCTGTTATGAATGATGGTGAATTTATTGCTGTCAAGAAGCTGAATTCGCGTGGAGAAGGAGCATCAAGCATCGACCGAAGCTTCTTTGCTGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGCATGGATTCTGTTTTCATGAAGATTCTAATCTTTTATTGTATGAGTACATGGAAAATGGAAGCCTTGGTGAAAAGCTTCATTCAAGTGCAACATTTTGTGTATTGGATTGGAATGTTAGATATGAAATAGCTTTAGGAGCAGCTGAAGGATTAAGCTATCTTCATTATGATTGCAAACCACAGATAATTCATCGCGATATCAAGTCGAACAATATTTTGCTTGATCATGTGTTTCAGGCTCATGTTGGAGACTTTGGATTGGCAAAGTTGATTGATTTTTCTTACTCAAAATCTATGTCTGCTGTGGCTGGATCATATGGTTACATTGCACCAGAATATGCTTACACCATGAAAGTGACTGAAAAATGTGACATCTATAGTTTTGGGGTGGTTTTACTGGAACTAGTAACTGGGAGGTCACCAGTTCAACCATTAGAACAAGGTGGTGATTTAGTGAATTGGGTGAGAAGATCAATTCAAGCATCTGTACCTACATTTGAATTATTTGACAAGAGATTGAATCTTAGTGAACAAAGAACTGTTGAAGAAATGTCTCTTATTCTTAAAATTGCACTGTTTTGCACAAGTACATCTCCACTTAATAGGCCTACAATGAGAGAGGTCATTGTAATGTTGATTGATGCTAGGGAATATGTCAACCAAACACCAACTTCTCCTACATCAGAATCTCCACTTGATGAAGATAAAAGTTCCTCTTCCAAAGATGGTGGTTTAGAGTTGTGA 3354 0.3679 MMLLSGFSSKNCFFIYMMLMFHLCIFFVISINEEGSNLLKFKASLLDSKNNLFNWNPSDSTPCNWTGVYCTDSLVTSVKLYHFNLSGNLSPTICNLPWLVELNLSKNFISGSIPKAFVNCEKLEILDLCTNRLHGQLLKSIWKIKTLQKLYLCENYMYGEVSEEIGNLTSLEELVIYSNNLTGNIPTSIKNLKKLRVIRAGLNFLSGNLPSEISECESLEILGLAQNQLQGSIPKELQKLQKLTNLILWQNSFSGELPPEIGNISSLQLIALHQNSLSGDIPKDLGRLSQLKKLYMYTNQLNGTIPIELGNCTNAVEIDLSENHLIGTIPKELGEISNLSLLHLFENNLQGHIPKELGNLRLLRNLDLSLNNLTGRIPLEFQNLEFMEDLQLFDNQLEGVIPPHLGAVKNLTILDISSNNLVGMIPRHLCEYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNLLTGSLPVEFYELHNLTALELHQNQFSGLISRGIGQLKNLERLHLSDNFFSGYLPFEIGNLAQLVTFNVSSNRFGGSIPNELGNCARLQRLDLSRDKNKFSGMLSNSIGNLVNLELLKVSDNMLFGEIPGTLGELIRLTDLELGGNRFTGSISFHFGRLSALQIALNLSHNNLSGTIPDSLGSLQMLESLYLNDNQLFGEIPSSIGDLPSLLVCNVSNNKLTGTVPDTTTFRKMDLTNFAGNNGLCRIGTNHCHPSLASSHREKATKNGLSREKIVSIVSGVVGFVSLIFIVIICWTMKRHRSSSFVSIEEEQTKPHVLDNYYFPKEGFTYQDLLEATGNFSESEVIGRGACGTVYKAVMNDGEFIAVKKLNSRGEGASSIDRSFFAEISTLGKIRHRNIVKLHGFCFHEDSNLLLYEYMENGSLGEKLHSSATFCVLDWNVRYEIALGAAEGLSYLHYDCKPQIIHRDIKSNNILLDHVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVNWVRRSIQASVPTFELFDKRLNLSEQRTVEEMSLILKIALFCTSTSPLNRPTMREVIVMLIDAREYVNQTPTSPTSESPLDEDKSSSSKDGGLEL 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01858 1117 Pfam Protein kinase domain 809 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01858 1117 Gene3D Ribonuclease Inhibitor 245 313 IPR032675 -
Car01g01858 1117 Gene3D Ribonuclease Inhibitor 314 387 IPR032675 -
Car01g01858 1117 Pfam Leucine Rich Repeat 410 430 IPR001611 GO:0005515
Car01g01858 1117 Gene3D Ribonuclease Inhibitor 388 728 IPR032675 -
Car01g01858 1117 Pfam Leucine rich repeat 604 664 IPR001611 GO:0005515
Car01g01858 1117 SUPERFAMILY L domain-like 34 305 - -
Car01g01858 1117 SUPERFAMILY L domain-like 563 715 - -
Car01g01858 1117 SUPERFAMILY RNI-like 255 568 - -
Car01g01858 1117 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Car01g01858 1117 Gene3D Transferase(Phosphotransferase) domain 1 887 1104 - -
Car01g01858 1117 PANTHER OS07G0152200 PROTEIN 17 1094 - -
Car01g01858 1117 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1094 - -
Car01g01858 1117 Gene3D Ribonuclease Inhibitor 29 244 IPR032675 -
Car01g01858 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Car01g01858 1117 SMART LRR_typ_2 408 432 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 528 552 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 480 503 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 96 119 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 288 312 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 578 602 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 504 527 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 240 264 IPR003591 -
Car01g01858 1117 SMART LRR_typ_2 651 675 IPR003591 -
Car01g01858 1117 MobiDBLite consensus disorder prediction 1091 1117 - -
Car01g01858 1117 Gene3D Phosphorylase Kinase; domain 1 769 886 - -
Car01g01858 1117 SMART serkin_6 808 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01858 1117 ProSiteProfiles Protein kinase domain profile. 808 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01858 1117 SUPERFAMILY Protein kinase-like (PK-like) 786 1082 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01858 Car-Chr1 42720688 42725455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01858 56 1086 Receptor kinase-like Gene Family AT1G73080 38.462 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car01g01858 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01858 - - gmx:100818311 1754.18