Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01852 ATGACCTGTTTCCCTTTCTTATTCAGTAAAACATCGTCTTCATCGAGACAAAATCCAGACAATGATGAAGATATTTCAGGCATTCATAATGTTAGAATCTATAGCTACAGAGAACTAAGGAATGCCACTGATAACTTTAGTCCGGCCAATAAAATCGGAGAGGGTGGTTTTGGTCCTGTCTACAAGGGACAACTTAAAGATGGAAAACTTGCTGCTATAAAAGTTCTTTCAGCAGAATCAAAACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTGATATCCGAAATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGTGTGGAAAAAGATAACAGGATATTAGTCTACAATTACCTCGAGAATAATAGTCTTGCACAAACTCTTCTAGGTGGAAGTCACAATAGTATCCACTTTGATTGGCGAGCGCGATGTAAAATATGCGTTGGGGTTGCACGTGGACTTGCCTTTCTTCACGAAGAAGTCAGGCCTCTTATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCCAAGATTTCCGATTTTGGCCTTGCAAAGCTTATTCCAGCGAACGTGACTCATGTCAGCACACGTGTAGCAGGAACACTAGGTTATTTGGCACCGGAGTATGCAATCGGAGGGAGGCTTACACGAAAAGCAGACATTTACAGTTTTGGCGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACAAACTCGCGACTGCCATCCAATGAACAATTCATTCTAGAGAGGGCATGGGCACTTTACGAGCAAAATGAATTAGTTGGGCTGGTAGATACATCACTTAACTGGGAATTCTACGCCGAGCAGGCCTGTAAATTTCTGAAGATTGGCCTTCTTTGCACTCAGGAATCTCCAAAGCACCGGCCGTCCATGTCTTCTGTGGTCAAGATGCTCACCGGAGAAATGAAAGTTGATGACAGTAGGATGACAAAACCTGCCTTGATTTCTGATTTTATGGACCTCAAAGTTAGAAAGAAACAAGAAAGTATAATTGATTTGAAGACTACATCTACATACAATACATCCTCTGCCTCAGATCACCAGGACACTACCATTGCATCAGCTGCAACTACAACCTTTACTACACAATTTGATCACAGCATGTAA 1164 0.4132 MTCFPFLFSKTSSSSRQNPDNDEDISGIHNVRIYSYRELRNATDNFSPANKIGEGGFGPVYKGQLKDGKLAAIKVLSAESKQGVKEFLTEINVISEIEHENLVKLYGCCVEKDNRILVYNYLENNSLAQTLLGGSHNSIHFDWRARCKICVGVARGLAFLHEEVRPLIVHRDIKASNILLDKDLTPKISDFGLAKLIPANVTHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPSNEQFILERAWALYEQNELVGLVDTSLNWEFYAEQACKFLKIGLLCTQESPKHRPSMSSVVKMLTGEMKVDDSRMTKPALISDFMDLKVRKKQESIIDLKTTSTYNTSSASDHQDTTIASAATTTFTTQFDHSM 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01852 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Car01g01852 387 SUPERFAMILY Protein kinase-like (PK-like) 22 317 IPR011009 -
Car01g01852 387 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01852 387 ProSiteProfiles Protein kinase domain profile. 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01852 387 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Car01g01852 387 Gene3D Transferase(Phosphotransferase) domain 1 122 334 - -
Car01g01852 387 PANTHER - 2 376 - -
Car01g01852 387 MobiDBLite consensus disorder prediction 1 21 - -
Car01g01852 387 CDD STKc_IRAK 52 319 - -
Car01g01852 387 MobiDBLite consensus disorder prediction 1 24 - -
Car01g01852 387 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 376 - -
Car01g01852 387 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01852 Car-Chr1 42587146 42590480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01852 20 373 Receptor kinase-like Gene Family AT1G53430 50.418 2.10e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g01852 Pkinase 9.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01852 - - gmx:100782320 610.527