Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01820 ATGGGTGTTAACGATGATTTCAACAAAGATAATGAATATGTTGACGATGATGTTCCACTTCCTGGATTTCGATTCCATCCCACTGATGAAGAACTTGTTACTTTCTATCTTCGAAGGAAACTTGATAACAAATCTATTGCTATTGATCTCATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAGTGTACCTGGAGCAGAGAAGGAAAGTTATTTTTTTTGCAAAAGAGGAAGAAAATATAGGAACAGCATTAGGCCTAATAGAGTAATAACAGGATCTGGATTCTGGAAAGCAACTGGAATAGATAAAGCAGTGTATTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACATTAGTTTATTATCGTGGTAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCTTCTAATATTCATACTAACAACAATGATGCTCATATTGCCCAAGAAGCAGAAATTTGGACATTATGTAGAATTTTCAAAAGAAATGTATCACAAAGGAAACAACAAATTGCAGAGGTGAAACAATTAGCTACCAAGCGTCAGATGATTCATGACAAGAGCAGCAGAATGAGCAGCAATGTGGAATTTAATATAAACAATCAACAAACATTTATCAATTTTGGTGCAAGTCATGAGaatcatcataataataatattgaagacaaactcatgatcaatactaattataCAAACATTGATCAAAGGAATCATCAGTTAATGAGTTGTCAAGTGTCACAACAACCTCAACAAAATGTAACACTATCTAATTCAAACTTGTGGATAAAGCAGCAGGTTGAGAATGAGCTCTTAATGTTTGATAATTGGGATGAGCTTGGATCAGTTGTTAAGTTTGCTGTTGATTCGCCTAGTTTGTAA 927 0.3323 MGVNDDFNKDNEYVDDDVPLPGFRFHPTDEELVTFYLRRKLDNKSIAIDLIKQIDIYKYDPWDLPKASVPGAEKESYFFCKRGRKYRNSIRPNRVITGSGFWKATGIDKAVYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNIHTNNNDAHIAQEAEIWTLCRIFKRNVSQRKQQIAEVKQLATKRQMIHDKSSRMSSNVEFNINNQQTFINFGASHENHHNNNIEDKLMINTNYTNIDQRNHQLMSCQVSQQPQQNVTLSNSNLWIKQQVENELLMFDNWDELGSVVKFAVDSPSL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01820 308 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
Car01g01820 308 ProSiteProfiles NAC domain profile. 19 178 IPR003441 GO:0003677|GO:0006355
Car01g01820 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 302 - -
Car01g01820 308 Gene3D NAC domain 28 182 IPR036093 GO:0003677|GO:0006355
Car01g01820 308 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 11 302 - -
Car01g01820 308 SUPERFAMILY NAC domain 17 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01820 Car-Chr1 42056545 42058727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01820 3 222 NAC Transcription Factor Family AT5G39820 50.413 2.18e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car01g01820 NAM 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01820 - - gmx:100790471 419.468