Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01817 ATGAAGGTTGGTGGTAGAAAGCAAGGTACAATGACACCATGTGCTGCATGCAAGCTTCTAAGAAGGAGATGTGCTATTGATTGTGTGTTTGCTCCATATTTTCCAGCTGATGAACCCCAGAAGTTTGGGAGTGTCCACAAAGTTTTTGGGGCTAGCAATGTGAACAAAATGTTACAGGAATTACCAGAACATCAACGAAGTGATGCAGTGAGTTCAATGGTATATGAAGCAAATGCAAGAGTAAGGGACCCTGTTTATGGATGTGTGGGAGCAATATCCTCACTGCAGCAACAAGTTGATATGCTTCAAACTCAATTAGCACAAGCACAAGCAGAGGTTATTCATATAAAAATGCACCAATTCTCATCCACCTCATCAGATCAACAACACCAACCATCACTAAATATGCCCCAATCCTTGTGGTCATACTAG 432 0.4167 MKVGGRKQGTMTPCAACKLLRRRCAIDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDMLQTQLAQAQAEVIHIKMHQFSSTSSDQQHQPSLNMPQSLWSY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01817 143 Coils Coil 92 112 - -
Car01g01817 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 4 136 - -
Car01g01817 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 136 - -
Car01g01817 143 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Car01g01817 143 MobiDBLite consensus disorder prediction 122 143 - -
Car01g01817 143 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01817 Car-Chr1 41975054 41978250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01817 1 120 AS2 family AT1G31320 81.667 3.85e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car01g01817 LOB 8.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01817 - - gmx:100803188 234.187