Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01800 ATGGGAAAAGGAAGAGCACCATGTTGTGATAAGAGTCAAGTGAAGAGAGGACCTTGGAGCCCTGATGAAGATCTTAAGCTTATTGCTTTTGTTCAGAAATATGGTCATGAAAATTGGAGAGCTCTCCCTAAACAAGCAGGTCTTCAGAGATGTGGCAAAAGTTGTCGTTTGAGATGGATCAATTATTTGAGGCCTGATTTAAAGAGAGGCAATTTTACAGCAGAGGAAGAGGAAACCATAATAAGGCTACATAAGGCCATCGGAAACAAATGGTCAAAGATTGCATCATGTATGCCTGGTAGAACAGATAATGAGATCAAGAATGTGTGGAATACACATTTAAAGAAAAAATTGGTCGTAAAAAATTCAGAGTCAAGTGCCTCAGAATCCAAATTAGAatcatcaataacctcatcctcttcatcagaatcatttttatcatcaAATGAGGTACCAAAGAGTACTACTCCTGCAACTAGTGAATTTAATGAGCAAACTTCACAAGTGACAATGACAAATGAAATTAAGAAAGATTATGAAAAACAATTATCCTCTAATATTGAACTTGTTAAGGATCCAAAAGATTCCTCAAATATTTCATTATCTTCAATTGAGTCTAATATATTGAACACAAGCCAAATTGGTGACATGGCTTCTCCATTAAGCTATTTAGGATCTTATGATGTTGACAATATATTACAAGAAGTTGAAAAACCAAACAATTTGATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATAGAGAATATTGGAACTTATCAATCAAATGATCAAGTACAATTAGAGGGGTTTCAAGCTAGTGATGAAAATATTATTAATTTTGGTGAAGAAAATGTTCAAGATGTTGTTGAAGCAAAAAAGTGGTCCCATGAATTTGAGAATGAGTTTGGAGTAGGTGAAAAATTGGAGTCAAACAAAGGTGATGGGGTCCTACCAAAGAATTATGATGCAGTTGAGCCAGAAATTGACCCTCATGCATTTGATTTCAATGATATCACAATGCAAGAATCTGAATTAGACTTTGGTAACATTCAATTGTGGCCCTCTTTGCCTCAAAATAATAACTTGGGGGGATAA 1107 0.3333 MGKGRAPCCDKSQVKRGPWSPDEDLKLIAFVQKYGHENWRALPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTAEEEETIIRLHKAIGNKWSKIASCMPGRTDNEIKNVWNTHLKKKLVVKNSESSASESKLESSITSSSSSESFLSSNEVPKSTTPATSEFNEQTSQVTMTNEIKKDYEKQLSSNIELVKDPKDSSNISLSSIESNILNTSQIGDMASPLSYLGSYDVDNILQEVEKPNNLIEIPWESDYDLWNFIENIGTYQSNDQVQLEGFQASDENIINFGEENVQDVVEAKKWSHEFENEFGVGEKLESNKGDGVLPKNYDAVEPEIDPHAFDFNDITMQESELDFGNIQLWPSLPQNNNLGG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01800 368 Gene3D - 16 68 - -
Car01g01800 368 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Car01g01800 368 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Car01g01800 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 314 - -
Car01g01800 368 Gene3D - 71 139 - -
Car01g01800 368 SMART sant 68 116 IPR001005 -
Car01g01800 368 SMART sant 15 65 IPR001005 -
Car01g01800 368 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Car01g01800 368 CDD SANT 71 114 IPR001005 -
Car01g01800 368 CDD SANT 18 63 IPR001005 -
Car01g01800 368 PANTHER - 1 314 - -
Car01g01800 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Car01g01800 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Car01g01800 368 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Car01g01800 368 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Car01g01800 368 MobiDBLite consensus disorder prediction 139 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01800 Car-Chr1 41449983 41454382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01800 1 264 MYB Transcription Factor Family AT1G79180 44.444 2.83e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g01800 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01800 K09422 - gmx:100101836 453.751