Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01788 ATGACACTTAGCACATATCACTCCTATAGTTACAATAATAATTTTTACCTTCCTTCTTCTCTTGTTCAAACTACCAATTCAGAAATTATCACTTTTCAACCTCAAGAACAATTGTCTTCTTATGTTGATGATGAAAGTTTCCTTTTTCAAAGTCCTTATGTTTACTCAAATGAGACTAATTACCCTTCTTCTTCTTATCAGCTACTTGATGATACCACTTTCAATGAAAACTTCATTTCTATTAATGAAATTTTCTCAAATGAACAATATTATTGCCCCCTTCCATGTGCAAAACGTCAGAAGCTATGTCATGAACAAATCGAAGAAGAACAAGAACTTTTGAATTCAACCAATTGTTTCTTGAACGAATTTCTTACTTCAATAGAAGGAGAACCGCCACCACCGCCCTTCTACGCTGTGCAAGAGTTTAATAATGAGGGAAATAACATTGTTAATGTTGTGAGCGATGAGAAGAAATTAGTCAAGGAAAAGAGTGTTTCTACGCAGAGTGTAGCTGCCAGAGAAAGGAGAAGGAAGATAAGTGAGAAAACACAAGAACTTGGTAAATTGGTTCCTGGTGGAATCAAGATGAACACAGCAGAGATGCTTAATGCTGCTTCTAGTTATGTTCAGTTTCTTCAAGCTCAACTTCGAATACTTCAACTTATGCAAACATTAACTAAGGAAGATAAGGAAGGTCCTTCAAGTGAAGATCTACAGAAACTTGTTGTTTCTCCTTTAGTTCAAGAGAGATTGTATTCAGAAGAAATGTGTTTTGTTCCAAAAGAGTTTGTCACCACCACATTGACCAATCATGATGATGTTCGATCACAACCTACCATCCTTAAGGGTCTTAAACAGCTTATTGGATCACAAATTGAGAAGAAACCAAAGCAAGAATAA 903 0.3544 MTLSTYHSYSYNNNFYLPSSLVQTTNSEIITFQPQEQLSSYVDDESFLFQSPYVYSNETNYPSSSYQLLDDTTFNENFISINEIFSNEQYYCPLPCAKRQKLCHEQIEEEQELLNSTNCFLNEFLTSIEGEPPPPPFYAVQEFNNEGNNIVNVVSDEKKLVKEKSVSTQSVAARERRRKISEKTQELGKLVPGGIKMNTAEMLNAASSYVQFLQAQLRILQLMQTLTKEDKEGPSSEDLQKLVVSPLVQERLYSEEMCFVPKEFVTTTLTNHDDVRSQPTILKGLKQLIGSQIEKKPKQE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01788 300 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 285 - -
Car01g01788 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Car01g01788 300 Gene3D - 161 233 IPR036638 GO:0046983
Car01g01788 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 285 - -
Car01g01788 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 222 IPR036638 GO:0046983
Car01g01788 300 Pfam Helix-loop-helix DNA-binding domain 171 214 IPR011598 GO:0046983
Car01g01788 300 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01788 Car-Chr1 41161086 41162731 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01788 74 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 35.745 2.94e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g01788 HLH 8.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01788 - - cam:101509781 582.408