Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01747 atggagagaATGTTCCCTCCAAAGAAGCCTTCAACTATGAATTCACATGACAGACCCATGTGTGTTCAAGGTGACTCTGGTCTTGTTCTCACAACTGACCCTAAACCTCGTCTTCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAACTTGGAGGACCTGATAAGGCCACTCCTAAAACTATTATGAGGGTTATGGGTGTCAAGGGTCTCACCCTTTACCACCTCAAGAGTCATCTTCAGAAATTTAGGCTTGGGAAGCAACCCCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATTGAGGTGCAAAGAAGACTTCATGAACAGCTTGAGGTACAAAAACACCTTCAGTTAAGGATTGAAGCTCAAGGGAAATACATGCAAAGTATATTGGAGAAAGCTTATCAAACACTTGCAGGTGAAAACATGGCAAGTAACTTAAAGGGTAGTGTTATTGTTGGACCTCAAGGAATGCCTGAAAATATGGCACTCTTGAAAGAATTTGGTTCACCACCTCTTAGTTTTTCATCTTTTCAAGATCTTGATCTTTTTGGCGGCGGCGGCGGCGATCAACTTGATCACCTACAACAAAACATGGACAAACAACCACTTGATCATGGATTCATGCAAATCAATGATAGTTTATGTCTTGGAAAAAAGAGGCCTAACCCTAACCCTTATAGTGGAAATGGAAAAAGCCCTTTAATGTGGAGTGATGATTTAAGGCTTCAAGATTTGGGAACACCTTCATCATGCTTAGAAGATCATCAAATTCAAATTGCACCACCATCATTGGATAGAGGTAGTGATATTGACACTATATCAGATATTTATGATACAAAAAATTTACTTCAAGGGGATATTTTAGGTGAAAAGAAATTTGATGGATCTATGAAACTTGAAAGGCCATCACCAAGAAGAGCACCACTTCATTCAGAAAGGATGAGTCCTATGATTAGTACTGGTACCATGGCACAAGGTAGAGGCTCACCATTTGGATGA 1101 0.4005 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASNLKGSVIVGPQGMPENMALLKEFGSPPLSFSSFQDLDLFGGGGGDQLDHLQQNMDKQPLDHGFMQINDSLCLGKKRPNPNPYSGNGKSPLMWSDDLRLQDLGTPSSCLEDHQIQIAPPSLDRGSDIDTISDIYDTKNLLQGDILGEKKFDGSMKLERPSPRRAPLHSERMSPMISTGTMAQGRGSPFG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01747 366 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Car01g01747 366 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Car01g01747 366 MobiDBLite consensus disorder prediction 1 20 - -
Car01g01747 366 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Car01g01747 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 315 IPR044848 GO:0003700
Car01g01747 366 Gene3D - 34 92 - -
Car01g01747 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 315 - -
Car01g01747 366 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Car01g01747 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01747 Car-Chr1 40282081 40284889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01747 4 366 G2-like Transcription Factor Family AT1G79430 58.421 9.54e-135 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car01g01747 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01747 - - gmx:100807793 573.163