Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01744 ATGGTGCATCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGATTATGGTCTCCTGAAGAAGATGAGAAGCTTGTTACATACATCACCACTCATGGACATAAAAGTTGGAGTTCCCTCCCAAAGTTTGCAGGCTTACAAAGATGTGGGAAGAGTTGTAGATTAAGATGGACTAACTATTTAAGGCCAGATCTAAAAAGAGGTTCCTTTACTTCTGAAGAAGAACAAATCATAATTGACATACATAGAATTCTTGGAAATAGATGGGCTCAAATAGCAAAGCACCTCCCTGGTAGAACTGACAACGAGGTCAAAAATTTCTGGAACTCATGTATTAAAAAGAAGCTTATTTCTCAAGGCTTAGATCCACAAACTCACAATTTACTTTCTCCTCATAAGAGATCCTCAAAACATAACAACATCTCTAATATCCATCAAAATTCCAATTCCATTTTCATTCTTACATCACAAATTCCAAATGCTGATCAAACTTTTTCTTCACTACCAAATACTATTCTTCAAACTCCTACAACTGTTTTCCCTAAACAATTTCAAACATCTTTCAATGTTCTTCCAAATAAACATCTAGATCAACTTTGTGTTGTCGAGCAAGAACAACCTCAAAACATATCCAACATTTGTTCAAATTCATGCATTGACCCTTCTAATGTTGAAATGTCTAACAATACTGAGAATATAATTTGGGTTTCAAGAGTTAATGATGATGATGATTTTAGAGGTTCAACATGTGAAGGAGGAACACAAGCTGAAGTGCATCAAGAGAAAGACAAGATTTGTGAGAAGGGAAATGAAGTAATTGACAACATGGGCAGTATTGAAATGAATGATGGTGATTGTTTGGAGAATTCTAATTTTGATTTTGGGTTGTTAGAGAGTGTACTTAACTCTGAATTTATATCTCATGATCTGGATTATATGGATGAACTTGCATGGAATTTTTAG 960 0.3479 MVHRCCSKQKIKRGLWSPEEDEKLVTYITTHGHKSWSSLPKFAGLQRCGKSCRLRWTNYLRPDLKRGSFTSEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSPHKRSSKHNNISNIHQNSNSIFILTSQIPNADQTFSSLPNTILQTPTTVFPKQFQTSFNVLPNKHLDQLCVVEQEQPQNISNICSNSCIDPSNVEMSNNTENIIWVSRVNDDDDFRGSTCEGGTQAEVHQEKDKICEKGNEVIDNMGSIEMNDGDCLENSNFDFGLLESVLNSEFISHDLDYMDELAWNF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01744 319 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Car01g01744 319 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Car01g01744 319 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Car01g01744 319 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Car01g01744 319 CDD SANT 68 108 IPR001005 -
Car01g01744 319 SMART sant 65 113 IPR001005 -
Car01g01744 319 SMART sant 12 62 IPR001005 -
Car01g01744 319 Gene3D - 10 66 - -
Car01g01744 319 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Car01g01744 319 CDD SANT 16 60 IPR001005 -
Car01g01744 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Car01g01744 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Car01g01744 319 PANTHER MYB DOMAIN PROTEIN 55 1 307 - -
Car01g01744 319 PANTHER BNAC05G40480D PROTEIN 1 307 - -
Car01g01744 319 Gene3D - 67 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01744 Car-Chr1 40208139 40209965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01744 1 233 MYB Transcription Factor Family AT3G12720 58.298 5.11e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g01744 Myb_DNA-binding 3.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01744 K09422 - gmx:100791209 402.519