Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01727 ATGCAAGCTTTAGTTTCAGCGAAGTTTCTTTTGCTCGTTGGAGAATCATTCCCTATGAGAAGGGCTTTAATCAATTCTAGGTTTTCTTGGTTTCATAATAGTGTTCAATGTAAGAGCAATCACGATTCTCTCACACTTTCAAGCATTGGTTTTAAAAGTAGTGAAATTGAACCTAAGATTACAACTAATAAATTGAATAAGGTTAAGCCATTAGGTTCTTCTTCCTCTGAGGCTATCAAGAGTAAGAGAAAACCCATTGGAATTAGTGAGAAAAAAGGAGTTAGGGTTATTGAGAAAAAACAGCAAATAGAGAGTGCCCCTTTTGCTGCTAAGTCGTTTTCGGAACTCGGTGTTCCGGATGTGTTGATTAAGAGGCTAGAAAATGAGGGTTTCAATGTTCCTACTGAAGTTCAGTCTGCTGCTGTTCCTACCATTTTGAAGAATCGCGATGTCATAATTCAGTCGTATACCGGTTCAGGTAAAACATTGGCTTATCTGCTTCCTATTTTATCGGTTATTGGGCCGTtgagaggcgagaatcgtgaaggtgaaggtgaaggtgatggtggtgagTCCGGAAAGAAATTAGGAATTGAAGCGGTTATTGTTGCTCCTTCTAGGGAACTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGATATTGGGAATGGATAATAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACAAGGCAGGAAGAAGCTCTTAAGAAAAATAAACCTTCCATTGTTGTTGGTACGCCTGGTAGGATAGCCGAGCTCAGTGCGAGTGGGAAACTTCGAACGCACGGCTGTCGATATTTGGTATTAGATGAAGTTGATGAGCTTCTGTCGTTCAATTTCCGCGAAGACATGCATAGGTTATTGGAGCATGTAGGGAGGAGATCTGGGGCAGACCTAAATTCAAAGGCTAAAAAGGCTGAGCGTCAGTTAATTATGGTATCCGCAACTGTGCCTTATTCGGTTGTAAGGGCTGCTAAAAGCTGGGGTTCTGACCCACTTATTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGTCTCCTGAGCCGGTCAATTTGTCAACTTCATCACCAAGCTCGAGTCCTAACTCCTCTGTGCCGTCTAAGGCTACGGTAGAGAGTCTACCTCCAGCATTGAAACACTATTACTGTGTAGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCATTGGATGCCAAATTTGTTATAGTTTTCATGAATCATACTAAGCAGCTAAAGGATGTTGTCTACAAGCTGGAGGCCCGTGGTGGGATGAAAGCTGCAGAGTTACATGGTGATCTCGGGAAGCTTGGTCGGTCGACGACTCTGAAGAAGTTCAAGAACGGAGAGGTTAGAGTTCTTGTGACAAATGAATTATCGGCTAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTGCCGACGGATTCAATTCACTATGCGCACCGAGCCGGTCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGCTAACCATATGTGAAGAGCCAGAGATGAGGTCTTCTTGCTCCATTCTTGCTGCTATATTTCATGTATCTGGCCAATGCCTATGA 1629 0.4174 MQALVSAKFLLLVGESFPMRRALINSRFSWFHNSVQCKSNHDSLTLSSIGFKSSEIEPKITTNKLNKVKPLGSSSSEAIKSKRKPIGISEKKGVRVIEKKQQIESAPFAAKSFSELGVPDVLIKRLENEGFNVPTEVQSAAVPTILKNRDVIIQSYTGSGKTLAYLLPILSVIGPLRGENREGEGEGDGGESGKKLGIEAVIVAPSRELGMQIVREFEKILGMDNKKVVQQLVGGANRTRQEEALKKNKPSIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADLNSKAKKAERQLIMVSATVPYSVVRAAKSWGSDPLIVQAKKIVPLETLSPEPVNLSTSSPSSSPNSSVPSKATVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVYKLEARGGMKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEMRSSCSILAAIFHVSGQCL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01727 542 CDD DEADc 122 346 - -
Car01g01727 542 SMART ultradead3 130 364 IPR014001 -
Car01g01727 542 Gene3D - 386 535 IPR027417 -
Car01g01727 542 Pfam Helicase conserved C-terminal domain 404 510 IPR001650 -
Car01g01727 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 15 525 - -
Car01g01727 542 MobiDBLite consensus disorder prediction 361 381 - -
Car01g01727 542 CDD SF2_C_DEAD 389 519 - -
Car01g01727 542 SMART helicmild6 428 510 IPR001650 -
Car01g01727 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 345 IPR014001 -
Car01g01727 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Car01g01727 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 15 525 - -
Car01g01727 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 542 IPR001650 -
Car01g01727 542 Pfam DEAD/DEAH box helicase 135 331 IPR011545 GO:0003676|GO:0005524
Car01g01727 542 Gene3D - 75 347 IPR027417 -
Car01g01727 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 524 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01727 Car-Chr1 39620589 39623437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01727 112 525 Eukaryotic Initiation Factors Gene Family AT3G19760 26.265 6.84e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01727 - - gmx:100812968 780.785