Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01716 ATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATCTGAAGACTTCAAACCTGCTTCTAAATAACAATGGGATTGAGAGTAGGATTGAGATGGGGAGGAAGGAGGAGAGCCAGATATGGGTTGGTCCGGGGAGAGAGGGGGAGGAGGAAACGTCACACATCCGTCGCCGCGGTCTCATGAACTGGGCACCAGCGAGATCCAGCTAA 231 0.5065 MIQLLEGVKYLHDNWVLHRDLKTSNLLLNNNGIESRIEMGRKEESQIWVGPGREGEEETSHIRRRGLMNWAPARSS 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01716 76 PANTHER CELL DIVISION PROTEIN KINASE 1 32 - -
Car01g01716 76 Gene3D Transferase(Phosphotransferase) domain 1 1 32 - -
Car01g01716 76 MobiDBLite consensus disorder prediction 48 76 - -
Car01g01716 76 SUPERFAMILY Protein kinase-like (PK-like) 1 33 IPR011009 -
Car01g01716 76 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Car01g01716 76 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 1 32 - -
Car01g01716 76 MobiDBLite consensus disorder prediction 48 64 - -
Car01g01716 76 ProSiteProfiles Protein kinase domain profile. 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01716 76 Pfam Protein kinase domain 1 32 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01716 Car-Chr1 39152011 39152786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01716 1 31 MAP Kinase Gene Family AT4G11330 64.516 5.98e-08 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Car01g01716 Pkinase 3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01716 K08818 - cit:102610073 69.3218