Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01685 ATGACAACGACGGCGATACCAACGGCTGATTCAGAACTAAAAACATATTGGTGCCACGAATGCGACATGAGTGTATCTCTAACTTCTTCACCCACTCCCAATCCTCTATTATGTCCTCAGTGTCACACCCATTTCCTTGAACTCATGGACTCACCTTTTTCTCAAAACGATGCCGAATCGCTTCTTCCTTCTTCACTATTCGATGTTGTTTTTCAAGACGCACTTTCCTTACTCTCACCCTCTCCGCGTAAAACACGCGCCGCAATAATCGTCCCTATAATAACCGTCACACCAACGATCCTCTCTTTACTTGACCCAAACGGCGTTGTTTTCTGCGCCGTTTGTAGAGAACAAATTTTTGTTGACTCAGAAGCTAAACAGCTTCCTTGCGATCATCTTTATCACTCCGATTGCATCACTCCGTGGCTTCATCTTCGATCCTCTTGTCCTCTTTGTCGTTTCCATATGTCGGAGCGAGAAGAAGACGATAATGACGACAACGGAGAGGAAGAAGATCTTAATGCTTCTGATATGATGAGGCAGATGGTGGTGCGGCTGTCGGAGTTGTCGGAGGATGATTTTTATGGTTTGAGAATCACTCTCAACCACATTGCTTCCCGTCATGCTCTACTTCACTCCAATGCTTCCGGTGCCGGCGACAGTCCTGCTCCCGGTGGTGAAATTGGCGCTGAAGGTGTAGATGGAGAGTCATGA 714 0.4678 MTTTAIPTADSELKTYWCHECDMSVSLTSSPTPNPLLCPQCHTHFLELMDSPFSQNDAESLLPSSLFDVVFQDALSLLSPSPRKTRAAIIVPIITVTPTILSLLDPNGVVFCAVCREQIFVDSEAKQLPCDHLYHSDCITPWLHLRSSCPLCRFHMSEREEDDNDDNGEEEDLNASDMMRQMVVRLSELSEDDFYGLRITLNHIASRHALLHSNASGAGDSPAPGGEIGAEGVDGES 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01685 237 Pfam zinc-ribbon 15 49 IPR039525 GO:0061630
Car01g01685 237 SUPERFAMILY RING/U-box 111 159 - -
Car01g01685 237 MobiDBLite consensus disorder prediction 215 237 - -
Car01g01685 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 53 - -
Car01g01685 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 164 - -
Car01g01685 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 170 IPR013083 -
Car01g01685 237 ProSiteProfiles Zinc finger RING-type profile. 112 153 IPR001841 -
Car01g01685 237 SMART ring_2 112 152 IPR001841 -
Car01g01685 237 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 81 164 - -
Car01g01685 237 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 10 53 - -
Car01g01685 237 Pfam Ring finger domain 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01685 Car-Chr1 37753456 37757062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01685 12 73 C3H Transcription Factor Family AT3G60080 48.485 4.48e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01685 K11982 - gmx:100775530 251.521