Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01681 ATGAAACAGAGACGCGCGGAGGAGGTTAGGGATGATGTTGATGAGGAAGGACGAAGCAAACAAGTACTTGGCAGAGGAGAACGACGCATTGGAGGACAATGCAGAAAAGGATCGCAAATGGCAGCAGAAATAAGCGTGGATGGCAGTAGAAATGAGGTTTTGGCTTTTGGATTTGAGACTGCAGAAACTCGAAGGAACAAGTGTGCAGCATGCTACAGGCAATTCAACAAAGTGGAGCACCTAGTGGAGCACATGAAGATCTCTTACCATTCTGTTCATGAACCAACCTGTGGCATTTGCAGGAAACACTGCAGATCCTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGAGATCTTTGCCAACAGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGACAGCCCTAATTCTCGCAGGATCCACCAACAAAAGTGCCAACTCTCTGGATTAAATGGAATAAGTGGTCGTTTTTCAAACATGGGAATTCGTGATAATTTGACAACTGGTGGTGGAGCAACAACAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGTGGAAGTGATGGGTCACTAGATCTTTGTGGAAGAGTTTGCTTAATCGATGAGCATGAGAACATCATCTTCCAATGTTATGTCAATCCACTAATTCCAATCACAAACTACAGGTATGAAACAACAGGTATGAGACAAGAATACTTAAGGGATGCAATGCCATTGAAACTTGTGCAAAGGAAGATTCAAGATTTCCTTTGCAATGGTGAACCCATTTGGACAATTCGTTCAAGAGGTGGAAAAGCTAAGATTCTTGTTGGTCATGGTTTAGATCATGACCTTGCCTCTTTGCAAATTGAGTATCCAACAACAAAAATAAGGGACACTGCAAAATATCCTCCACTCATGAAAACTAGCAAGCTCAGCAATTCACTCAAGTATGACATTCAAAATGGGATACAAGATCCTTATGATGATTGTGTTGCAGCAATGAGACTCTACATGAGAATGAAAACACAAATACACAAAATAGAGGATTACCCTTTGGCTTCTGATCCACAGAACAGGAACAATTTTGCAACATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTTGAGATCTCAAGATCTGACTACTACTGCTGGTGCATGGATTCCTCATATAGTCTATGA 1209 0.4194 MKQRRAEEVRDDVDEEGRSKQVLGRGERRIGGQCRKGSQMAAEISVDGSRNEVLAFGFETAETRRNKCAACYRQFNKVEHLVEHMKISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECREIFANRGCKFCLKVLDSPNSRRIHQQKCQLSGLNGISGRFSNMGIRDNLTTGGGATTRGPQVVALACKMVGGGSDGSLDLCGRVCLIDEHENIIFQCYVNPLIPITNYRYETTGMRQEYLRDAMPLKLVQRKIQDFLCNGEPIWTIRSRGGKAKILVGHGLDHDLASLQIEYPTTKIRDTAKYPPLMKTSKLSNSLKYDIQNGIQDPYDDCVAAMRLYMRMKTQIHKIEDYPLASDPQNRNNFATWRQSELERMSPEQMLEISRSDYYCWCMDSSYSL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01681 402 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 59 398 - -
Car01g01681 402 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
Car01g01681 402 SUPERFAMILY Ribonuclease H-like 201 349 IPR012337 -
Car01g01681 402 MobiDBLite consensus disorder prediction 1 22 - -
Car01g01681 402 CDD REX4_like 187 342 IPR037431 GO:0006364|GO:0008408
Car01g01681 402 SMART exoiiiendus 185 351 IPR013520 -
Car01g01681 402 Gene3D - 183 358 IPR036397 GO:0003676
Car01g01681 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 95 IPR013087 -
Car01g01681 402 PANTHER OS02G0709000 PROTEIN 59 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01681 Car-Chr1 37675439 37680906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01681 57 398 C2H2 Transcription Factor Family AT3G27970 70.655 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g01681 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01681 - - aprc:113862359 611.298