Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01672 ATGGATCCTGATTTGAATGAGAAGCCTACGGATCGAATCGAAGAGCAAATGCAAATGAAACGTCTTGAAGCCATTTTCAAGGCTATGAAAAGTCAGAATTTGCAAAAGAGTCACACTCCGATTCAGATAACTAATTTCGAAGGAGAATTGTTAACAAAAGCTGAAAATTTTCAAGATGAAAACAAGGTGATTAAGGAAGAGGTTGGTGTTAATGTTGAAGAAGAGACATCGGAATGTGAGAAAACAGGAAAAAGGAAGGCGGAGTATTTGGTTGCGGAAGCATTAGGGATGGATACCTCGGAGGATGGCATTGGTGGCCGCACGAGACACTTCTTCGATTGTAATATATGTTTTGAAAAGGCGAATGAACCTGTGTTAACTTGCTGTGGTCACTTGTTTTGTTGGGAATGTTTCTATAACTTGTCGTATGCTTATTCAAATGCTAAAGAATGTCCTGTTTGTGAAGGAGAGGTCGTTGAAACCGACATCATCCCGGTTTATGGCAATGGAAGGGTCCATGATAATGGTCATTTGGAAATGAATGAAACTGGTTCCCAAGTTCCCGATCGACCCCGTGCAGCTAGAGTTGAGAGTACCCGGCAGCGGCGGAGAAGACGCAGAGCTGGTTCTTCAAACCATGATTTATCGTTGTTTGGTGACTTTGATGGATTAGAAGAGTCTGATTCGTTACAATTCCCGAGTTTATCTCCCGATTGA 717 0.4212 MDPDLNEKPTDRIEEQMQMKRLEAIFKAMKSQNLQKSHTPIQITNFEGELLTKAENFQDENKVIKEEVGVNVEEETSECEKTGKRKAEYLVAEALGMDTSEDGIGGRTRHFFDCNICFEKANEPVLTCCGHLFCWECFYNLSYAYSNAKECPVCEGEVVETDIIPVYGNGRVHDNGHLEMNETGSQVPDRPRAARVESTRQRRRRRRAGSSNHDLSLFGDFDGLEESDSLQFPSLSPD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01672 238 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Car01g01672 238 SUPERFAMILY RING/U-box 108 164 - -
Car01g01672 238 SMART ring_2 114 154 IPR001841 -
Car01g01672 238 Pfam zinc-RING finger domain 114 155 IPR001841 -
Car01g01672 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 168 IPR013083 -
Car01g01672 238 MobiDBLite consensus disorder prediction 179 238 - -
Car01g01672 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 207 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car01g01672 238 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01672 Car-Chr1 37299513 37302979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01672 112 211 C3H Transcription Factor Family AT1G74990 45.000 2.82e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01672 K10666 - gmx:100778919 180.259