Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01666 ATGGAGCTTGATTTAAGCTTAGGAGACTCTTCAAAGCCTCTAATTGGCTTCATGGAAAACCAACATCGTGAAGCTTCCAATGAACTTGGCTTAGGCTTCAACACCACTTTATCAATTGGTCCAGTCATCactacacaaacagatcaacaacaacaaattaagactaaaacaaacaacaacagtaacaGTACTGAAAATCCTAACCCTGTACTAAATCAACTTGATCTTCTTCCTCCACTCTCTTTCCCATGGCACTCTCCTTCTGAAAATGTGGGTAGTTTATTGGTATCAACTGAGTTTGGGGGTTCTTCAAGGGGCTTAGACGTGAACGTGGTTCCACTGGCGGTGGTTGTGGCGGAAGATGAGGCGGCGCTTTCATCATCACCTAATAGCGCAGCATCTTCTTTTCAGATGGATCTGTGTATATACAgtggtggtggtggtggaggGAGTTTGAGTGGTTCAGGTGGGAACAAGAGAGAGTTTTCAGATGGTGAAGGTTATTATCAAAGGAATTGTTCAAGAGTGAGTGATGATGATGATAACTGTGGTGGTGGAAACACAAGGAAGAAGCTTCGACTCTCTAAGGATCAATCTGCTTTTCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCTAAACAAAAACTGGCCCTTGCAAAATCACTCAATCTTAGCCCTCGTCAAGTAGAAGTTTGGTTCCAAAACAGAAGAGCAAGGACTAAACTGAAGCAAACAGAAGTAGACTGTGAATATTTAAAGAGATGCTGTGAGACATTAACAGAAGAAAATAGAAGACTACACAAAGAGCTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTTAACATGCAATTACCAGCAACTACTTTGACTATGTGTCCTTCTTGTGAGCGTGTTGCTACAAATTCCACTGCCACTTCCTCTGTCACTACAAGTGCCACAATCAAAACTAGTGATGATTCAACCTCAAAATCCAATAATAATATTGGATTTCCTTTTGGCAAACCAAGAATTCATCAACACCATCttgaattgaattga 1050 0.3705 MELDLSLGDSSKPLIGFMENQHREASNELGLGFNTTLSIGPVITTQTDQQQQIKTKTNNNSNSTENPNPVLNQLDLLPPLSFPWHSPSENVGSLLVSTEFGGSSRGLDVNVVPLAVVVAEDEAALSSSPNSAASSFQMDLCIYSGGGGGGSLSGSGGNKREFSDGEGYYQRNCSRVSDDDDNCGGGNTRKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKSLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTTSATIKTSDDSTSKSNNNIGFPFGKPRIHQHHLELN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01666 349 MobiDBLite consensus disorder prediction 314 333 - -
Car01g01666 349 SUPERFAMILY Homeodomain-like 177 246 IPR009057 -
Car01g01666 349 MobiDBLite consensus disorder prediction 314 338 - -
Car01g01666 349 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 328 - -
Car01g01666 349 CDD homeodomain 189 246 IPR001356 GO:0003677
Car01g01666 349 Pfam HD-ZIP protein N terminus 30 136 IPR006712 GO:0005634
Car01g01666 349 MobiDBLite consensus disorder prediction 46 67 - -
Car01g01666 349 Gene3D - 193 243 - -
Car01g01666 349 SMART halz 245 288 IPR003106 GO:0006355|GO:0043565
Car01g01666 349 CDD bZIP 238 277 - -
Car01g01666 349 PANTHER - 1 328 - -
Car01g01666 349 ProSiteProfiles 'Homeobox' domain profile. 185 245 IPR001356 GO:0003677
Car01g01666 349 Coils Coil 258 281 - -
Car01g01666 349 SMART HOX_1 187 249 IPR001356 GO:0003677
Car01g01666 349 Pfam Homeodomain 189 243 IPR001356 GO:0003677
Car01g01666 349 Pfam Homeobox associated leucine zipper 245 279 IPR003106 GO:0006355|GO:0043565
Car01g01666 349 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01666 Car-Chr1 36857066 36860582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01666 64 308 Homeobox Transcription Factor Family AT5G47370 54.941 2.39e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g01666 HD-ZIP_N 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01666 K09338 - gmx:100805312 407.527