Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01647 ATGGATTCTTGGAGTTTTGTTCCTGAAGAAAAAGGGTATGTTTCTAATGATACACTTTCAGCTTCAAACACACTTGGAAGAACTAAAGGTTCATTCTTGAGTTGGGATTTGAAAACCCCATCAAGTTTTTTGGGTCAACAAAGCATTGAGAATGATAATAATCATAATCAAGGTTTTGAGGAATTGGGGTTTCATGGAATGTTGGGGAAACAATTGTCAAatgttgatgttgatgatgatgatgatgttgttgttggtaatgTTCATAGCAGAAAAATGAATAGTGATGTTGTTATGGCTGCTCCAATTCCAAATGCATTTTCTGTTAGAGAAAATCACTTTAATTCAAAGATTTCAAATACTTTAGGTGACACTAATGGTTGCAATTCACTCATAGATTTGAAGTTGGGTAGGTTTGGTGATCATGGAGATGCAATTGGTTCAACATTTTCAAAAGGGACTAACATTTTGTCGTCGTCCGGGTCGTCGACGCCACCTAAGAGGGTTCGGTCTTCCGGAGTCCATTCGCAGATTTCTTACTGTCAAGTCTATGGATGTAATAAGGATCTGAGTGGTTGTAAAGATTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCAAAGACTTCCAAAGTTATTGTGAATGGAATTGAACAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGCCGAAGAAAGCCACAAGTCGGTATTCACTCTGGAAGATCTGGAAGGTTGCTTCAGCCATATGGTGATAGCCGATTCCAAGGAACCATGCTAACATCGGCATCTTTTATATGCCAAGAGATACTCCCCGGCGAGGTCTTATCTTCTGAGAAATGTGCCGCTAGTAACTGGTGGAGACCTATAAAAGCCGAAGACGGAACCGGCTTTAGGCCCTTTTCATCTATTCCAGTCAGCAATGGACATCCTCATTCAAGAACTTTATTTCCTTCCTATAGTGATAAACAATTTCCCTTTCTCCACGAAAACGGTGCTACATCTGCTACTGAAAGCATATTCTGCGAAAACAATAGTCAATATCCTCCTATCCTCGGGGGCTCGAATTCTGGATCACAATCATTATTCCAAAACACCTCCTTAGGAAGCGAGGACTTCAATGTTTTTGAAACGGAATCAACTGTTCAAGGATTATCGGGAGTTTCGGATGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAATCGTCAGGAATTCCCATGTCTCGTCACTTGGTCATTCCGACCAGCCACAGCCATTACGGCATGAGTCCGGTCTCTGAAAAGATGATAGGAATGAGTTCACACGCTTCGAGCGGAGTGTCGGATAGGTTTCCATCTGAATTAAATCATAACGATGGAAGTCATCTTAGTCCTATATTGATATCCGGCAACAATGAACTTGTCCATTTTGAAATGGCAGACGGGATATTCCATGGTTCGGATTTTGTCAATGTGAAAGACCGTCTTTCTTGTGAAGATGGTCCGACCATTGATTTGCTTCAACTATCGTCACAACTTCAGCGTGTCGAGCATCAGAGGCAAGCCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACTTAA 1680 0.4101 MDSWSFVPEEKGYVSNDTLSASNTLGRTKGSFLSWDLKTPSSFLGQQSIENDNNHNQGFEELGFHGMLGKQLSNVDVDDDDDVVVGNVHSRKMNSDVVMAAPIPNAFSVRENHFNSKISNTLGDTNGCNSLIDLKLGRFGDHGDAIGSTFSKGTNILSSSGSSTPPKRVRSSGVHSQISYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRSGRLLQPYGDSRFQGTMLTSASFICQEILPGEVLSSEKCAASNWWRPIKAEDGTGFRPFSSIPVSNGHPHSRTLFPSYSDKQFPFLHENGATSATESIFCENNSQYPPILGGSNSGSQSLFQNTSLGSEDFNVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSGIPMSRHLVIPTSHSHYGMSPVSEKMIGMSSHASSGVSDRFPSELNHNDGSHLSPILISGNNELVHFEMADGIFHGSDFVNVKDRLSCEDGPTIDLLQLSSQLQRVEHQRQALQVKQENDSSCSLRIT 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01647 559 SUPERFAMILY SBT domain 180 259 IPR036893 GO:0003677|GO:0005634
Car01g01647 559 Pfam SBP domain 181 254 IPR004333 GO:0003677
Car01g01647 559 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 559 - -
Car01g01647 559 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Car01g01647 559 Coils Coil 527 547 - -
Car01g01647 559 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Car01g01647 559 MobiDBLite consensus disorder prediction 247 266 - -
Car01g01647 559 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 559 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01647 Car-Chr1 36054667 36060487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01647 132 297 SBP-box Gene Family AT1G69170 55.422 6.36e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car01g01647 SBP 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01647 - - gmx:100777766 797.349