Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01645 ATGGGGAGGGGAAGGGTGCAGTTGAAGAGAATTGAAAACAAGATCAACAGGCAAGTAACTTTTTCTAAGAGAAGATCTGGATTACTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTTTTCTCCAACAAAGGAAAGCTCTATGAGTATTCAAGCGATCCATGTATGGAAAGAATTCTGGAACGGTATGAAAGATATTCATATGCAGAGAGGCAGCTTGTTGCAACTGATCAACCACAAAATGAAAATTGGATTATAGAACATGCAAAGCTGAAGGCAAGGTTGGAAATCATACAGAGAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATTCTGCTCTCAAACAAATTAGATCGCGGAAGAACCAACTCATGTATGAATCCATTTCAGAGCTCCACAAAAAGGTAAGTACTTTCATTTTGATATCAAATGTGCATGTATATATTTATTTATATACATGCATGGTCAAATACAAAAATGTTTCTTTATTGAAGGAATTACAATAA 573 0.3613 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMERILERYERYSYAERQLVATDQPQNENWIIEHAKLKARLEIIQRNQRNFMGEELDGLSIKELQNLEHQLDSALKQIRSRKNQLMYESISELHKKVSTFILISNVHVYIYLYTCMVKYKNVSLLKELQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01645 190 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Car01g01645 190 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Car01g01645 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car01g01645 190 Coils Coil 88 108 - -
Car01g01645 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car01g01645 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Car01g01645 190 Pfam K-box region 84 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g01645 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car01g01645 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car01g01645 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car01g01645 190 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 158 - -
Car01g01645 190 ProSiteProfiles K-box domain profile. 88 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g01645 190 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car01g01645 190 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Car01g01645 190 Coils Coil 122 145 - -
Car01g01645 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01645 Car-Chr1 35800729 35816677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01645 1 157 MADS-box Gene Family AT1G26310 71.069 1.97e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car01g01645 K-box 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01645 K09264 - gmx:100816836 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00873 07 7741718 7747057 Car01g01645 01 35800729 35816677 PCT