Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01640 ATGGCAGAAGAGAGCAACGAGAAGGGAATCCAAATTCGAACCCTAACTGGTGAATCCATCACTCTTCACATCACTCCCACTTCAACCATGATCAAACATTTCTGGTTTCAGGGAGATAAATTGCAATTGCATGATCAAATTGGTTCTTATATCATCCAAAGCGGGGAGTTTCTTGTCTTGGTTCCATTCGCCAAGAAGGAACCAACTCGGACGGAGAAACATGATGATTTGTTTTTCTCTTCTCCAAATGTTGCTTGCAATGCTTCAACTTCTAATCTTGCAGATACAACATGGTCCAATATAATGGAAGATTTGTCACAATTAGGCGATACTAATGAAAAAAAGGATGATAATAATGTATCTAATTTCGAAAAAGAAAAAGAGAAAACTGTAGACGTTGAAATGAAAAGGGGTTTGGGTTCTGAGAAGCAGATAGAGCTTCCTTATAATCTCATATTGAACTCACTGGATTATAACAGTGAGAGTGTTCTTGGAGAGCATAGTTGTGAGGTTTTTTCGAAGGTTTTGGAGTCGGTGAATTGTTTATCTGATCTGCCTCTTGGACACTGCAAGTTGTTCAGGAGAGCTTGTTTGAAGGGAGCTTTTTCCAATGATGGTGGTGGTGTTACTTGCTTGTGTCCACTGTGGTTGAAGATCCTTGTGAAGTCGTTTGCTTTCGCAAACATTTTTTCCGCATTTCTTCATTTACAGGGTAGGAATGTGACAACTTGTCTACTGGAAGAAGCTCTTGATCAGCTTGCAAAGTTCGGAGTCAAACTTGGCCTCCATGACATGAAGCATCTTTCCCTTCTTTGTCCTCATTTAGTGTGTTTTGTAGATGACATTGGGAAGGTGTGTTTTGGTGATATCATTGTTGTAGTAAATCATTCAACTAGTAATGAAGATCAAATTGAACATAATCCTAAAAGAGCTCGCAAGTGGCTGCATGTTTCAAAGATCGTCGTTACATTAAAGAGAAGGGACAGTTCTTTCCGAAAATTTCTGGGGCGGGCTTTTGAGCAGCTTCAGTTTAAAATTGGAGACAAGATGAACGTGGGAATTTCCTTGGAAGAACTACTTGCAGCAGTCAAGGACCATGATTTTACCATAAAAGAAAACAAGTCAAAACATGTAAAGAGAAGCTCAACCTCCTCAAGACCTGACAAGGACTGCATTGGGTGCAATGACACAAAGTCATTAATGGCTGTGGACATGGTTGAACATCTTAAGAAAGGAATTGGATCTGAAGGACAGATTGTGCATATCAAAGACATATGTCCCAGAAAAGCCATTTACAGTGAGATCCCAGCTGAACTATCAGAGAAAATGAGATCTGCACTGAAGTATATTGGAGTTTCCAAATTGTATAGTCACCAGGCAGAGTCTATACAAGCCTCCCTTTTAGGAAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGTAAATCTCTTTGTTACAACCTGCCTGTTCTAGAAGAGCTACTTAAGAATCCATCATCATGTGCTATGTACATATTTCCTACAAAGGCATTAGCTCAAGATCAGCTAAGATCTTTGTTACGCATGACAAAAGAATTTGATGTTGACTTAAATATTGGTATATATGATGGTGACACTTCTCATAGTGAAAGGACATGGCTACGTGATAATTCTAGATTGTTAATCACAAATCCAGATATGTTACACATAACAATCTTGCCCTACCATCGGCGATTTAGCCGGATTTTATCGAATCTAAGGTTTCTGGTAATTGATGAAACTCATACCTACAAGGGAGCATTTGGATGTCATACCGCTCTTATATTAAGGAGGCTTAGGCGACTCTGCTCACATGTATATGGAGCTGTTCCTTCTTTTATTTTCTCTACTGCAACTTCTGCGAATCCTCACGAGCATTCTATGGAACTTGCAAATTTACCCACAGTGGAGTTATTTCAGAATGATGGAAGTCCATCTGCAAGAAAACTTTTCATCCTTTGGAATCCTGTTTTGCGCCCAAAAGCTATATTGAAGAAAGCTCGGTTTGCTATGGATAATGATGAATTGGTGGATGAAAATGATAATTTAGTTCGTTCAAGCCCAATCGTGGATGTTTCACGCCTTCTTGCAGAAATGGTTCAACATGGTCTTCGCTGCATTGCATTTTGTAAATCACGGAAACTTTGCGAGCTTGTTTTATCGTATACACGTGAGATTCTTCATGAGACAGCGCCGCATCTACTGGACTCCATATGTGCGTATCGTGGTGGCTACATTGCAGAGGAAAGAAGAAAGATAGAGAGTGCATTTTTTGGTGGTAAAATTTGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGAGAAATTGACGTCACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTGTGGCAACAAGCTGGTAGGGGTGGGAGGAGAGATAAGCCATCTCTAGCTGTCTATGTTGCATTTGGCGGACCACTTGATCAATACTTCATGAAAAATCCTAGGAAACTTTTTGAAAGACCAATTGAATGCTGTCATATTGATTCACAAAACAAGCAGGTTCTTGAACAGCATTTGGTCTGTGCAGCTCATGAACACCCTCTAAGTGTGCAGTATGATGAGAAGTATTTTGGTGCTTGCTTAGAGAGTGCTTTAAATTCTTTAAAAGATAGAGGATACATATGTTCCGATCTGTCTGATTCTTCTAGAATTTGGAACTACATTGGTCCCGAGAAATTACCTTCACAAGCAGTCAATATCCGAGCAATAGAAACTGTTAGATACAGTGTCGTAGATCAGAAAAAGAAAGAAGTCCTTGAAGAGATAGAGGAAAGTAAGGCTTTCTTTCAGGTATATGATGGTGCAGTGTACTTGCGTCAAGGGAAAACCTATTTGGTTGAAAAGTTAGATCTATGTAGCAAAACTGCTTTCTGCAAAGAGGCTGATCTGAAGTATTATACAAAGACTCGAGATTATACTGATATTCATGTCATTGGGGGTAATATTGCTTATCCAGTAATTGATTCATCCATGTTTCCAAAAACAAATGCCCGTGCTAATGTATGCCAAGTAACAACTACTTGGTTTGGATTTTATCGTATTTGGAGAGGAAGCAATCAAATCATTGATGCTGTTGATCTAGCACTTCCTCAATATTCCTATGAGTCACAGGCAGTCTGGATTCCTGTGCCACAATCAATAAAAGAAGCAGTGGTCAAGCAAAATTATGATTTCCGTGGAGGTTTGCATGCAGCTTCTCATGCTGTTTTACACGTAGTGCCTTTACATATAGTGTGCAACTTGTCTGATTTGGCTCCTGAGTGTCCAAATCCTCATGACAGCCGATACTATCCTGAAAGAATTTTAATATATGATCAACATCCTGGAGGGTCTGGAATTTCAGTACAGGTTCAACCCTGTTTCACAAAGTTCTTGGAAGCTGCTCTAGAAGTGCTCACATGTTGCCGCTGTTCGGCAGATGTAGGTTGCCCTAACTGTGTTCAGAGCTTTGCTTGTCATGAATATAATGAGGTTTTGCATAAGGGTGCGGCCATTATGATCATCAAGGGTATTCTAGATGCAGAAAACTAG 3591 0.3988 MAEESNEKGIQIRTLTGESITLHITPTSTMIKHFWFQGDKLQLHDQIGSYIIQSGEFLVLVPFAKKEPTRTEKHDDLFFSSPNVACNASTSNLADTTWSNIMEDLSQLGDTNEKKDDNNVSNFEKEKEKTVDVEMKRGLGSEKQIELPYNLILNSLDYNSESVLGEHSCEVFSKVLESVNCLSDLPLGHCKLFRRACLKGAFSNDGGGVTCLCPLWLKILVKSFAFANIFSAFLHLQGRNVTTCLLEEALDQLAKFGVKLGLHDMKHLSLLCPHLVCFVDDIGKVCFGDIIVVVNHSTSNEDQIEHNPKRARKWLHVSKIVVTLKRRDSSFRKFLGRAFEQLQFKIGDKMNVGISLEELLAAVKDHDFTIKENKSKHVKRSSTSSRPDKDCIGCNDTKSLMAVDMVEHLKKGIGSEGQIVHIKDICPRKAIYSEIPAELSEKMRSALKYIGVSKLYSHQAESIQASLLGKNVVVATMTSSGKSLCYNLPVLEELLKNPSSCAMYIFPTKALAQDQLRSLLRMTKEFDVDLNIGIYDGDTSHSERTWLRDNSRLLITNPDMLHITILPYHRRFSRILSNLRFLVIDETHTYKGAFGCHTALILRRLRRLCSHVYGAVPSFIFSTATSANPHEHSMELANLPTVELFQNDGSPSARKLFILWNPVLRPKAILKKARFAMDNDELVDENDNLVRSSPIVDVSRLLAEMVQHGLRCIAFCKSRKLCELVLSYTREILHETAPHLLDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDKPSLAVYVAFGGPLDQYFMKNPRKLFERPIECCHIDSQNKQVLEQHLVCAAHEHPLSVQYDEKYFGACLESALNSLKDRGYICSDLSDSSRIWNYIGPEKLPSQAVNIRAIETVRYSVVDQKKKEVLEEIEESKAFFQVYDGAVYLRQGKTYLVEKLDLCSKTAFCKEADLKYYTKTRDYTDIHVIGGNIAYPVIDSSMFPKTNARANVCQVTTTWFGFYRIWRGSNQIIDAVDLALPQYSYESQAVWIPVPQSIKEAVVKQNYDFRGGLHAASHAVLHVVPLHIVCNLSDLAPECPNPHDSRYYPERILIYDQHPGGSGISVQVQPCFTKFLEAALEVLTCCRCSADVGCPNCVQSFACHEYNEVLHKGAAIMIIKGILDAEN 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01640 1196 Pfam DEAD/DEAH box helicase 457 626 IPR011545 GO:0003676|GO:0005524
Car01g01640 1196 Gene3D - 427 646 IPR027417 -
Car01g01640 1196 SMART helicmild6 731 812 IPR001650 -
Car01g01640 1196 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 855 IPR001650 -
Car01g01640 1196 Pfam Helicase conserved C-terminal domain 701 810 IPR001650 -
Car01g01640 1196 CDD SF2_C_Hrq 657 821 - -
Car01g01640 1196 CDD DEXHc_Hrq1-like 455 636 - -
Car01g01640 1196 Pfam MrfA Zn-binding domain 1085 1167 IPR018973 -
Car01g01640 1196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 463 644 IPR014001 -
Car01g01640 1196 Gene3D - 685 878 IPR027417 -
Car01g01640 1196 PANTHER ATP-DEPENDENT HELICASE HRQ1 33 1195 - -
Car01g01640 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 830 IPR027417 -
Car01g01640 1196 SMART ultradead3 451 657 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01640 459 818 Eukaryotic Initiation Factors Gene Family AT5G11200 21.337 2.26e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01640 - - cam:101511069 2347.01