Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01596 ATGTTGAAGAATAGACATCAAAGGAATGTTTCAGATAAAGCAACAAAGCAAAAGATGTATTTTTGCAAGTATTGTAAGAAGGAGTTTACCAATTGGCAAGCTTTAGGGGGACAACAGAATGCTCACAAAAAACAAAGAAAAATTGCAAAAAAAGACAAGATTCTCACCATGACTTCTCCTTATTTTAAAGACTCATTACCACTCAATTTCAACTCTTATTATAATTCAATTTTTGCTCTAAACCAAAACCTTCAGTTACAACTTGGTTTATTTAATTACAATTCTCATCAAACAATACTACCTACAAGTGGATCAACTAATGAGAAGTTGGATTTGAATTTCATGTCTTTAAGTGATTATGAAAAATCTAGTTTATCAACAAGATCTGTGAGTAGAGCTACAGAAGAGCTTGATTTAACTCTCAGACTTGAACTTCCAAACTAA 444 0.3131 MLKNRHQRNVSDKATKQKMYFCKYCKKEFTNWQALGGQQNAHKKQRKIAKKDKILTMTSPYFKDSLPLNFNSYYNSIFALNQNLQLQLGLFNYNSHQTILPTSGSTNEKLDLNFMSLSDYEKSSLSTRSVSRATEELDLTLRLELPN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01596 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Car01g01596 147 SUPERFAMILY beta-beta-alpha zinc fingers 15 47 IPR036236 -
Car01g01596 147 PANTHER ZINC FINGER PROTEIN JAGGED 9 143 IPR045320 GO:0003700
Car01g01596 147 PANTHER OS02G0182300 PROTEIN 9 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01596 Car-Chr1 34003982 34004425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01596 9 75 C2H2 Transcription Factor Family AT5G25160 40.000 1.32e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g01596 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01596 - - psom:113339648 59.3066