Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01595 ATGTTGGAGAATATGCATCAAAGCAAAAACAATGTTTCACACAAGGCAACAAAGAAAAATATATATTTATGTAAGTATTGTAAGAAAGAGTTCACCAGTTGGAATGCTTTAGGAGGACATCAGAATGCTCACAAGAAAGAAAGAAAAATTGCAAAAAAAGACAAAATTCTCACCATGGCTTCCGCTTATTTTAAAGACTTATTACCACTCAATTTCAACTCTTATTATAATTCAACTTTTGCTACAAACGAAAACCTTCATTTACAACTTGGTTTATTTGATTACAATTCTCGTCAAAGAATACTACCTACAAGTGGATCAACCAATGAGAAGTTGGGTTTGAATTTCATGTCTTTATGTGATTATGAAAAGTCTAGCTCATCAACAAGAGCTGTTAGTAGAGCTAAAGAGGAGCTTGATTTGACTCTCAAACTTGAACTTCCAAGCTAA 450 0.3267 MLENMHQSKNNVSHKATKKNIYLCKYCKKEFTSWNALGGHQNAHKKERKIAKKDKILTMASAYFKDLLPLNFNSYYNSTFATNENLHLQLGLFDYNSRQRILPTSGSTNEKLGLNFMSLCDYEKSSSSTRAVSRAKEELDLTLKLELPS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01595 149 PANTHER ZINC FINGER PROTEIN JAGGED 8 145 IPR045320 GO:0003700
Car01g01595 149 Pfam C2H2-type zinc finger 22 47 - -
Car01g01595 149 Gene3D Classic Zinc Finger 3 67 - -
Car01g01595 149 PANTHER ZINC FINGER PROTEIN 2 8 145 - -
Car01g01595 149 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Car01g01595 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Car01g01595 149 SUPERFAMILY beta-beta-alpha zinc fingers 17 49 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01595 Car-Chr1 33987926 33988375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01595 11 77 C2H2 Transcription Factor Family AT5G25160 40.000 1.17e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g01595 zf-C2H2_6 2.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01595 - - gmx:102668090 68.9366