Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01590 ATGGAGCCACAACGTGTCTCAGGAGACGAGACAACTGATGGTAACTTAGTTTTTACTTTTCGTTGGAATGCTATCCGACGCGTTTATGAAATGTATCAACATCGGAGAGATGACAACCAATCTCAGATCAGTGAGGAGTGGGACCTGCGCATTTATTCCCACGATGGAAACTACATTTTCCGCGAAaacaacaacaacaacaacaaTCAGAGCAAGTTATTTGGAAGAGAAAATATCACAAGAATTAAGATTGAAGAAGGAGCGCCATATTTTGAGAAAGACTTGATATGTTCCATATGTCTTGACGAGCTTCCAGTTGGATCAGAAGTGATTCAATTGCCTGTCCCCTGTTGTCATGTTTATCATGAAGAGTGCATTATGAGGTGGTTGGATATGTCTAACATTTGCCCCTTGTGTCGTAGGCCAGTCTCGTAA 435 0.4023 MEPQRVSGDETTDGNLVFTFRWNAIRRVYEMYQHRRDDNQSQISEEWDLRIYSHDGNYIFRENNNNNNNQSKLFGRENITRIKIEEGAPYFEKDLICSICLDELPVGSEVIQLPVPCCHVYHEECIMRWLDMSNICPLCRRPVS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01590 144 Pfam Ring finger domain 97 140 IPR001841 -
Car01g01590 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 40 142 - -
Car01g01590 144 SUPERFAMILY RING/U-box 91 143 - -
Car01g01590 144 SMART ringv_2 96 140 IPR011016 GO:0008270
Car01g01590 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 144 IPR013083 -
Car01g01590 144 SMART ring_2 97 139 IPR001841 -
Car01g01590 144 ProSiteProfiles Zinc finger RING-type profile. 97 140 IPR001841 -
Car01g01590 144 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 40 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01590 Car-Chr1 33701823 33706175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01590 78 140 C3H Transcription Factor Family AT5G01980 42.857 1.00e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01590 - K11982 cam:101490108 306.219