Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01581 ATGGCCGAATCAGAGCACGACGACCACACCTCACCCGAACGCGATGACCAAATAAACAACAAGAAGAAGAAGCTTCGCAAGAGGAAAAGATCTCGTAAGTTGGAGCAGGAAGTAGAAAAGGAACAAGAGGAGGAGAATGAGAACACGGAATCTGAAGTAGAGAAGAATGATGACACCGTGCAACAACAAGGAGAAGAAGATGAAGACGGTGAAGATGGCGAAGAAGAGAAAAAAGAGGAGATTGTTGTTTCATCTGGAATTATGAGCACCGAATCTTTTTCTTCTCTAGGGTTGTCACAACCTACTTCTAAGTCTATTATGGATATGGGTTTTAACCGTATGACTCAGATTCAAGCGAAAGCAATTCCCCCGCTATTGATGGGAAAGGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGAAAAACTCTTGCATTTTTAATTCCAGCTGTGGAGTTGTTGTACAATGTGCAGTTCACACCTCGTAATGGAACTGGTGTTGTTGTCATTTGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTTGCAAAGGAATTACTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCGGGTAGAAAGGGAGAAGCTGAGCGAATTGTTAAAGGGGTAAATCTGTTGGTTGCAACGCCTGGCCGTCTTCTTGACCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAAGCGGACAGGATATTGGAAGCAAACTTCGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGCAAAGGCAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGACCTCGCCCGCTTGTCTTTTCAGACACCTCCAATTTATGTTGATGTAGATGATGGGAGGAAAAAGGTCACAGTTGAAGGATTGGAGCAGGGCTATGTTGTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTATTCATTCTTGAAGAGATATCAATCAAAGAAATTGATGGTCTTTTTCTCTTCGTGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCATTGGATTAGATTGTTTAAATATTCACGGAAAGCAAAAGCAGAATGCTCGGACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTCGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATTTGAAGGCAGCTAAGATTCCTGTGAAAGAGTATGCATTTGATGATAAAAAGCTTTCAAATGTACAATCTCAACTGGAAAAATTGGTGGCCGGCATTTATCATTTGAACGCTTTGGCTAAGGATGCTTATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCTTTCTGTTTTTCAAACCCACCAAAGATAAATCTGAACATAGACAGCAGTGCTTCGAAGCATAGGAAGAAAATTCACAAAGTGGAAGGAAGAAGACATTGA 1671 0.4135 MAESEHDDHTSPERDDQINNKKKKLRKRKRSRKLEQEVEKEQEEENENTESEVEKNDDTVQQQGEEDEDGEDGEEEKKEEIVVSSGIMSTESFSSLGLSQPTSKSIMDMGFNRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKQRQTALFSATQTKKVEDLARLSFQTPPIYVDVDDGRKKVTVEGLEQGYVVVPCAKRFVVLYSFLKRYQSKKLMVFFSSCNSVKFHADLLKCIGLDCLNIHGKQKQNARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKIPVKEYAFDDKKLSNVQSQLEKLVAGIYHLNALAKDAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFCFSNPPKINLNIDSSASKHRKKIHKVEGRRH 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01581 556 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Car01g01581 556 Gene3D - 68 303 IPR027417 -
Car01g01581 556 MobiDBLite consensus disorder prediction 1 20 - -
Car01g01581 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 481 IPR001650 -
Car01g01581 556 SMART ultradead3 110 315 IPR014001 -
Car01g01581 556 Pfam Domain of unknown function (DUF4217) 473 533 IPR025313 -
Car01g01581 556 MobiDBLite consensus disorder prediction 61 76 - -
Car01g01581 556 Gene3D - 311 551 IPR027417 -
Car01g01581 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 58 537 - -
Car01g01581 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 297 IPR014001 -
Car01g01581 556 Coils Coil 24 59 - -
Car01g01581 556 MobiDBLite consensus disorder prediction 1 83 - -
Car01g01581 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 453 IPR027417 -
Car01g01581 556 CDD DEADc_DDX18 102 299 IPR044773 GO:0003724|GO:0005524
Car01g01581 556 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Car01g01581 556 PANTHER RNA HELICASE 58 537 - -
Car01g01581 556 SMART helicmild6 351 432 IPR001650 -
Car01g01581 556 CDD SF2_C_DEAD 312 442 - -
Car01g01581 556 SMART DUF4217_3 472 535 IPR025313 -
Car01g01581 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Car01g01581 556 Pfam Helicase conserved C-terminal domain 327 431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01581 Car-Chr1 33333828 33340963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01581 91 450 Eukaryotic Initiation Factors Gene Family AT3G13920 30.959 1.52e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01581 K13179 - gmx:100798290 912.909