Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01578 ATGGGTGTTGATGATAGAACTTTGGAAGCTGAGGGAGTTGGCAACATAGTGATCAAAAGAAGAAATGGTAAAACAACAGAAATTGAGGGAGAGGATGTGATGCTAGTTGAACCAGAAGATGATGGTTCAAAGAAAGTTAATGATGTGGAGGCTGCACATGACCCAGAAAGTGATGCAGAGGACGTGTTGCAGGCTAAATCAAAAGATGAACATTCAGAATTGCAGAACCAATTGAATGAAGCTCAAGAAGATCTAAAGAAACCAAAAGAACAAATTCTTCAGGCTGAGAAGGAGAAGGAAAAAGCTATTGATGAGTTGAAAGAAGCACAAAGAGTGGCTGAGGAAAAGAAAGAAGAAGAATGGCAGGAAGAACTTGGAAATGTGAAGAACGAAAAAACAGTTGTGTATGCTACTGGGGTTCACACCTCTTGCGATGAAGCAACTCATGTGGGTTATGATAATAACCAAGTTGGACACTTTCAAAAGGTGCATACATCGATTAGAATATTCTGCATTTATTCAATTGTTATTGGAATTCTTATTGAGCTTATAGTGATGTATCCAATACAACATAGAAAGTATATAAATGGAATTGACAATCTTTTGGTGCTTTTGAATGGTGGAATTTCAATTGCATTGCCAATTGTTTTGTCTGTTACAATGGCTATTGGTTCTCATAGAGAAGGATTAACATTAGAGGAAGGATCAAATCATCTTCCATTGTTTGGACCAAACAAGTTGGAAGAGAAAAAAGAGAGCAAATTTGTGAAGTTCTTAAAGGATATATGGAACCTTTTGTCATGGGTCATGGGAGCTGCTGCATTAATGGCAATGACTTTGGCTAATGGTAGTGGAAGACCTCCTGATTGA 870 0.377 MGVDDRTLEAEGVGNIVIKRRNGKTTEIEGEDVMLVEPEDDGSKKVNDVEAAHDPESDAEDVLQAKSKDEHSELQNQLNEAQEDLKKPKEQILQAEKEKEKAIDELKEAQRVAEEKKEEEWQEELGNVKNEKTVVYATGVHTSCDEATHVGYDNNQVGHFQKVHTSIRIFCIYSIVIGILIELIVMYPIQHRKYINGIDNLLVLLNGGISIALPIVLSVTMAIGSHREGLTLEEGSNHLPLFGPNKLEEKKESKFVKFLKDIWNLLSWVMGAAALMAMTLANGSGRPPD 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01578 289 Gene3D - 155 227 - -
Car01g01578 289 PANTHER CALCIUM-TRANSPORTING ATPASE 228 289 - -
Car01g01578 289 PANTHER CALCIUM-TRANSPORTING ATPASE 131 227 - -
Car01g01578 289 SMART Cation_ATPase_N_a_2 215 282 IPR004014 -
Car01g01578 289 Pfam Cation transporter/ATPase, N-terminus 226 276 IPR004014 -
Car01g01578 289 PANTHER PLASMA MEMBRANE ATPASE 228 289 - -
Car01g01578 289 PANTHER PLASMA MEMBRANE ATPASE 131 227 - -
Car01g01578 289 Gene3D - 138 154 - -
Car01g01578 289 SUPERFAMILY Calcium ATPase, transmembrane domain M 96 227 IPR023298 -
Car01g01578 289 Coils Coil 64 131 - -
Car01g01578 289 MobiDBLite consensus disorder prediction 29 88 - -
Car01g01578 289 SUPERFAMILY Calcium ATPase, transmembrane domain M 226 281 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01578 Car-Chr1 33285451 33286919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01578 134 227 Primary Pumps ATPases AT2G18960 73.404 2.62e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01578 K01535 - gmx:100785442 132.88