Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01565 ATGGATGGGAACAAGGACGACGCATTGAAAAGCCTGAAAATCGGTAAAGAAGCTTTAGAAAAAGGCGATCGTAATCGTGCTTTGAAGTTTCTTAACAAAGCTCGCCGATTGGACCCCACCCTTCCAATCGACGATCTGTTGTCCACGATAGACAGCGATGCAGGGGATCATCCCCCACCAGCTGCTGAGTCGCCGAATAACTCCGATCAACCTACAATTCGCCGAAGGACTTCCGCTCCGGCGCCAGGGCCATCGTCATCCTCCTCAACAACATACACTGAAGAGCAAGTTACAATTATAAGAGAAATTAAGAGGAAGAAGAATTATTATGATATTTTAGGGTTGGAGAAGAGTTGCACGGTGGATGATGTTCGAAAATCATATAGGAAGCTGTCGTTGAAGGTTCATCCTGACAAGAACAAAGCTCCTGGAGCGGAGGAAGCATTTAAAGCGGTTTCGAAGGCGTTTCAGTGTCTTGGTAATGAGGAGAGTAAGAGGAAGTATGATGTTTCTGGAGAAGATGAAGTGGTTTACGAGAGGCGTGCTGCTGCGAGGCCGGCTTCTGCTAGAGGTTTTAATGGTTACTATGAAGCTGATATTGATGCTGAGGAAATATTCAGGAATTTCTTCTTTGGAGGAATGGCACCTGCTGCTAATTTTGGTGGGTTTAGTTTTGGTGGACCAGGGATGGGTCATAGGCAGGCTGCTGCTGATAATGGTTCCGGCGGATTCAATGTTCGTGCATTGATTCAGGTGCTTCCGGTGCTTCTTATTTTGCTTGTTAACTTTTTGCCTTCATCGGATCCGGTTTATACTCTTTCGCAGAACTATCCTTATGAACACAGGCTTACTACCACTAAGGGTGTTAACTACTATGTTAAGTCAGCAAAGTTCGAACAAGATTATCCGTTAGAAAGCCGCGAGCGTGCTACCATTGAGGCGAAGGTTGAGAGGGAATACTTTGGTATTCTTCGCCAGAATTGTCAGTTTGAGTTGCAGCGGCGTCAGTGGGGATATATCAGGGAAACACCTCATTGTGATATGCTTCGGAAGTTTGATTTGGTGCATTGA 1071 0.4566 MDGNKDDALKSLKIGKEALEKGDRNRALKFLNKARRLDPTLPIDDLLSTIDSDAGDHPPPAAESPNNSDQPTIRRRTSAPAPGPSSSSSTTYTEEQVTIIREIKRKKNYYDILGLEKSCTVDDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLGNEESKRKYDVSGEDEVVYERRAAARPASARGFNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGGPGMGHRQAAADNGSGGFNVRALIQVLPVLLILLVNFLPSSDPVYTLSQNYPYEHRLTTTKGVNYYVKSAKFEQDYPLESRERATIEAKVEREYFGILRQNCQFELQRRQWGYIRETPHCDMLRKFDLVH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01565 356 PRINTS DnaJ domain signature 110 128 IPR001623 -
Car01g01565 356 PRINTS DnaJ domain signature 128 143 IPR001623 -
Car01g01565 356 PRINTS DnaJ domain signature 144 164 IPR001623 -
Car01g01565 356 CDD DnaJ 108 161 IPR001623 -
Car01g01565 356 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Car01g01565 356 ProSiteProfiles dnaJ domain profile. 108 172 IPR001623 -
Car01g01565 356 Pfam Domain of unknown function (DUF1977) 264 336 IPR015399 -
Car01g01565 356 SUPERFAMILY Chaperone J-domain 104 225 IPR036869 -
Car01g01565 356 MobiDBLite consensus disorder prediction 45 95 - -
Car01g01565 356 Pfam DnaJ domain 108 169 IPR001623 -
Car01g01565 356 Gene3D DnaJ domain 104 220 IPR036869 -
Car01g01565 356 PANTHER - 1 354 - -
Car01g01565 356 MobiDBLite consensus disorder prediction 66 95 - -
Car01g01565 356 ProSitePatterns Nt-dnaJ domain signature. 149 168 IPR018253 -
Car01g01565 356 SMART dnaj_3 107 164 IPR001623 -
Car01g01565 356 PANTHER AT29763P-RELATED 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01565 Car-Chr1 32823047 32824922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01565 103 180 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.366 2.03e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01565 K09518 - gmx:100788812 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01565 01 32823047 32824922 Car01g01565 01 32823047 32824922 ECH