Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01555 ATGGTTCATCTAACGCGTTGTCGTAATGGTTGTGGTTTCTACGGTTCTGCTGAAAACAAAAACTTTTGTTCAAAGTGTTACAAAGATTGCATCGAAGAAAACACCAAAGCATCAGAAATGGAAGGTCCTGTTCTTGGTTCATCATCTCCTTCTCAAAAACAGAGTGTTTCGGAGAGCTCTGTAACTGATTTCTGTGCAGCTATTGATTCTATTACTCTCACAGACACTACAACCATCAAGAAGAAAAATAGGTGCAATAGTTGCAACAAAAAAGTTGGAATACTTGGATTCGAGTGTCGCTGTGGAGATTTATTTTGTGGAAGACATAGATACCCAGAAACACACTCATGTAATGTTGATTGGAAAAACATTGGTCGCCAAATTTTGGCCAAACAAAACCCAAAATGTGTTGGTGACAAATTAGATTCAAGAATATAG 438 0.3767 MVHLTRCRNGCGFYGSAENKNFCSKCYKDCIEENTKASEMEGPVLGSSSPSQKQSVSESSVTDFCAAIDSITLTDTTTIKKKNRCNSCNKKVGILGFECRCGDLFCGRHRYPETHSCNVDWKNIGRQILAKQNPKCVGDKLDSRI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01555 145 Pfam AN1-like Zinc finger 85 118 IPR000058 GO:0008270
Car01g01555 145 ProSiteProfiles Zinc finger AN1-type profile. 79 125 IPR000058 GO:0008270
Car01g01555 145 Gene3D - 3 61 - -
Car01g01555 145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 55 - -
Car01g01555 145 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 6 145 - -
Car01g01555 145 SUPERFAMILY AN1-like Zinc finger 76 139 IPR035896 -
Car01g01555 145 SMART A20_3 4 28 IPR002653 GO:0003677|GO:0008270
Car01g01555 145 ProSiteProfiles Zinc finger A20-type profile. 1 35 IPR002653 GO:0003677|GO:0008270
Car01g01555 145 Gene3D - 72 128 IPR035896 -
Car01g01555 145 Pfam A20-like zinc finger 6 28 IPR002653 GO:0003677|GO:0008270
Car01g01555 145 PANTHER AN1-TYPE ZINC FINGER PROTEIN 6 145 - -
Car01g01555 145 SMART AN1_Zf_4 85 122 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01555 Car-Chr1 32536785 32537222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01555 7 142 C2H2 Transcription Factor Family AT3G52800 36.478 2.08e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01555 - - cam:105851196 224.557