Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01552 ATGTCTGCGCTGGTTTTGTATAGGTATGAGCTCGGTCGTCAGCCAACAAACACTAAATTATCAATTAACAAGACAATCAGAAGGATCCGTGTTCAAGGGAGTACTGTGAAGTGGAAAACACTTAGATTGAATACCGGTAACTTCTCATGGGGTAGTGAAGTAGTAACTCGCAAGACTCGTCTTCTGGATGTGGTTTACAATCCCTTAAATAACGAGCTTGTCCGAACGCATACTCTTGTTAAGAGTGCTATTGTTCAGTGGATATATCTTAGATTGGATACTGATAACTTCTCATGGGGCAGTGAAGCAGTAACTCGCAAGACTCGTGTTCTGGATGTGGTTTACAATGCCTCAAATAACGAGTTCGTCCGAACGCAGACTCTTGTTAAGAGTGCTATTGTTCAGATTGATGCTGCACCATTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGAAATTGGTAGAAACATCACTATGGTGTTGAAATTGAGGAAACTTGAGAACTGTCAAACAGATCGTCAGCTAGATTCCCTCATTGAAGAGAAGTTTGGTGGTGGTCGTTTGCTGGCCTGGCCTGTATTTCATCTCGTCCAGGTCAATGTGGCAGGGTTGCTGGATACATCCTCGAAGGTAAAGGAACTGGAATTTTACATGAAGAAGTTACAAAGGAAGAAAGGAAATGGTGTTGCTTAA 693 0.4257 MSALVLYRYELGRQPTNTKLSINKTIRRIRVQGSTVKWKTLRLNTGNFSWGSEVVTRKTRLLDVVYNPLNNELVRTHTLVKSAIVQWIYLRLDTDNFSWGSEAVTRKTRVLDVVYNASNNEFVRTQTLVKSAIVQIDAAPFKQWYLQHYGVEIGRNITMVLKLRKLENCQTDRQLDSLIEEKFGGGRLLAWPVFHLVQVNVAGLLDTSSKVKELEFYMKKLQRKKGNGVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01552 230 Pfam Ribosomal protein S8e 90 190 IPR022309 -
Car01g01552 230 Pfam Ribosomal protein S8e 9 86 IPR022309 -
Car01g01552 230 Gene3D - 88 225 - -
Car01g01552 230 Gene3D Ribosomal protein S8e, subdomain 140 186 IPR042563 -
Car01g01552 230 PANTHER 40S RIBOSOMAL PROTEIN S8 85 158 - -
Car01g01552 230 PANTHER 40S RIBOSOMAL PROTEIN S8 8 86 - -
Car01g01552 230 Gene3D - 15 87 - -
Car01g01552 230 PANTHER 40S RIBOSOMAL PROTEIN S8 85 158 IPR001047 GO:0003735|GO:0005840|GO:0006412
Car01g01552 230 PANTHER 40S RIBOSOMAL PROTEIN S8 164 230 - -
Car01g01552 230 CDD Ribosomal_S8e_like 8 155 - -
Car01g01552 230 PANTHER 40S RIBOSOMAL PROTEIN S8 164 230 IPR001047 GO:0003735|GO:0005840|GO:0006412
Car01g01552 230 PANTHER 40S RIBOSOMAL PROTEIN S8 8 86 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01552 Car-Chr1 32465226 32466587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01552 8 218 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 48.661 3.11e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01552 K02995 - dcr:108219610 201.83