Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01543 ATGGAAAAGAAAAGAGTTACGGTACCTCTTGTTTGTCACGGTCACTCTCGTCCAGTGGTTGATCTCTTTTACAGTCCCGTTACTCCCGATGGTTTCTTCCTTATAAGCGCAAGCAAAGATGCTAGTCCTATGTTAAGGAATGGAGAGACTGGAGATTGGATTGGAACATTTGTAGGGCACAAAGGTGCAGTTTGGAGTTGCTGTTTGGATGCTAATGCTTTGCGGGCTGCAACTGCTTCTGCTGATTTCTCAACCAAAGTTTGGGATGCATTAACAGGCGATGAGTTACATTCTTTTGAGCACAAGCACATTGTTAGAGCATGTGCCTTTTCTGAGGATACACACCTTTTGCTCACTGGGGGAGCAGAAAAAATTCTCCGACTTTATGATTTGAATCGGCCTGATGCACCACCCAAAGAAGTGGATAAATCCCCTGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCATGCACTGATAAGGGAGGTGTGAGGCTATGGGATGTAAGAACTGGTAAAATAGTCCAGACACTTGACACCAAGTCGCCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGTTATATTACAACAGCTGATGGTTCTACTGTCAAATTTTGGGATGCAAATCACTATGGATTAGTGAAGAGCTATGATATGCCGTGCAATGTGGAATCAGCTTCATTGGAGCCCAAGTTTGGGAATAAGTTTATTGCTGGGGGAGAAGACTTGTGGGTTCATGTTTTTGATTTCCATACTGGCAATGAGATTGCATGCAACAAAGGCCATCATGGTCCTGTACATTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCATCAGGATCTGAGGATGGAACCATCAGAATATGGCAAACAGGCCCATTGGGTCATGATGAATCAGAGGGTTTATCCCCAAATGGATCCATTGAAAAGGTTAAGGCAAATGCAGAGGAAGATGTTTCACGCAGGATTGAGGGATTTCATATTGCTGAGGAGGCCAAGTCCAAAGGAAAGGAAGAGGCCACCGGGGAGGaattatga 1062 0.4454 MEKKRVTVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDASPMLRNGETGDWIGTFVGHKGAVWSCCLDANALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRLYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDKGGVRLWDVRTGKIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCNVESASLEPKFGNKFIAGGEDLWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLGHDESEGLSPNGSIEKVKANAEEDVSRRIEGFHIAEEAKSKGKEEATGEEL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01543 353 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Car01g01543 353 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Car01g01543 353 Pfam WD domain, G-beta repeat 147 174 IPR001680 GO:0005515
Car01g01543 353 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Car01g01543 353 SUPERFAMILY WD40 repeat-like 4 300 IPR036322 GO:0005515
Car01g01543 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Car01g01543 353 Gene3D - 9 316 IPR015943 GO:0005515
Car01g01543 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Car01g01543 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 183 IPR001680 GO:0005515
Car01g01543 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Car01g01543 353 PANTHER OS02G0205400 PROTEIN 1 344 - -
Car01g01543 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Car01g01543 353 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 344 - -
Car01g01543 353 SMART WD40_4 259 298 IPR001680 GO:0005515
Car01g01543 353 SMART WD40_4 5 47 IPR001680 GO:0005515
Car01g01543 353 SMART WD40_4 92 130 IPR001680 GO:0005515
Car01g01543 353 SMART WD40_4 50 89 IPR001680 GO:0005515
Car01g01543 353 SMART WD40_4 217 256 IPR001680 GO:0005515
Car01g01543 353 SMART WD40_4 177 214 IPR001680 GO:0005515
Car01g01543 353 SMART WD40_4 134 174 IPR001680 GO:0005515
Car01g01543 353 CDD WD40 14 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01543 Car-Chr1 31647397 31655508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01543 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 29.448 3.65e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01543 K13137 - gmx:100818422 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01543 01 31647397 31655508 Car01g01543 01 31647397 31655508 ECH