Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g01533 | ATGTGGAACCCTTTATCATGGGTTATGAAAGTTGTTGCATTAATGGAAATTGCTTTAGATAATGATAGTGAAAGACCTCTTGATTGGCATGATTTTAATGGTATTATTGCTCTTTTGGTTATTAATTCAACAATCAGGTTCATTGAAGAAAACGATGCTGGTAATTCTGGGTTTAGGTCTACCATTCATGATTCTGTTGATAGGGATGATGAGAAAGTGTCGGAATTGGTTCCTATTGTCGAGGTTGATGGTTTAGGTTCTTATGAAGTTGTCCCGAATGATATGGTGTTGAAGAAGTATAAGAAGGATTTGAAAGATAATGCTGACAAAGTGAAAGAGGCAAAAAGGAAGAAACTTAAATTAAGGGAAAGTGTTggaaaccacgaacgttcttggtttaggggttag | 408 | 0.3211 | MWNPLSWVMKVVALMEIALDNDSERPLDWHDFNGIIALLVINSTIRFIEENDAGNSGFRSTIHDSVDRDDEKVSELVPIVEVDGLGSYEVVPNDMVLKKYKKDLKDNADKVKEAKRKKLKLRESVGNHERSWFRG | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g01533 | 135 | Coils | Coil | 97 | 131 | - | - | |
| Car01g01533 | 135 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 1 | 55 | IPR023298 | - | |
| Car01g01533 | 135 | PANTHER | PLASMA MEMBRANE ATPASE | 1 | 56 | - | - | |
| Car01g01533 | 135 | Gene3D | - | 1 | 80 | - | - | |
| Car01g01533 | 135 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 56 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g01533 | Car-Chr1 | 31218608 | 31219015 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car01g01533 | 1 | 50 | Primary Pumps ATPases | AT2G07560 | 66.000 | 2.96e-17 | 75.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g01533 | K01535 | - | cam:105851219 | 136.732 |