Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01520 ATGGCCTCCATAGTTACTCACAAGATGGACTATACTTTTCTCGAACAGCTTAATGATCAACGCGATAATTGGAGTATCAGAGTTCGAATTGTTCGTATGTGTATTGTCTACACTACACAAAGTGAGAATGAACCAATCTCTTTGGACATTATTTTGTTGGATGAAAAGAAAACACCTTTGCATGCAACAATCAAGAAAGAACTTCTCCCGACTTTCAAAAACATGATACAAGAAGGTGATATATACAACATAATAAATCTGAAAATTTCACCCGCAAATGATTCTTATAGACCTGTCGTAGGAACAAAGAAGGCATTGTTTTTGACCACAACTATGGTAAATAAAATCCAAGACCCACAATTTACCATTCAAAAACATTACTTCAATTTTACTTCCTTCAAATCATTACCCCAAAGATTGGGAGATAAAGTCAATCTAACGGACATCATTGGAACACTGCATGTTGTTGGACATGAAGAGCAAGTTTATGTTGGTGACAAACCTACAAAAATACTCAGACTAGAAATCAAAATGCATGGGGGCGAAACTATCAAAGTCACTTTATGGAGAAATATAGTTGCTGATTTTCAAAACTTATTTGTCCATCACAAGCTACATGATGGTCCTAAGGTTGTTGCAATAACATCAACAACGGTTAAAAAATTTAGAGATGACTATTCAATCAACTCAACTTCAACAACAAGGGTTTATATTAACCTAGACATACCTGAATTCAATATACTTTCACAAAGTGATTCCAGTCAAAGTCAAGAAGATGAAGTTAGAGAAATACCACCTCAAGATTTTTCCCACAATACACCGGAGAAAAGAATGGTCAGGAATCAAACAACATTAAAACACATAATGGCCATGAAATGGGAATCCAATGTTCAGGAAAGAGTATTCACAATATGTGCAACTGTCAATGACATTGATTATAAATTTGGATGGAATTACATTGGATGTGAAAATTGTCTCACAAAATTAACTCAACAAGGCCAACAATACAATTGTCCCTCATGTGACATGACATCAAAGTATCCTGCACCAAGGttgtatgctcatgcatttcattttggtaaatcgtgctga 1092 0.3379 MASIVTHKMDYTFLEQLNDQRDNWSIRVRIVRMCIVYTTQSENEPISLDIILLDEKKTPLHATIKKELLPTFKNMIQEGDIYNIINLKISPANDSYRPVVGTKKALFLTTTMVNKIQDPQFTIQKHYFNFTSFKSLPQRLGDKVNLTDIIGTLHVVGHEEQVYVGDKPTKILRLEIKMHGGETIKVTLWRNIVADFQNLFVHHKLHDGPKVVAITSTTVKKFRDDYSINSTSTTRVYINLDIPEFNILSQSDSSQSQEDEVREIPPQDFSHNTPEKRMVRNQTTLKHIMAMKWESNVQERVFTICATVNDIDYKFGWNYIGCENCLTKLTQQGQQYNCPSCDMTSKYPAPRLYAHAFHFGKSC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01520 363 MobiDBLite consensus disorder prediction 256 274 - -
Car01g01520 363 SUPERFAMILY Nucleic acid-binding proteins 8 119 IPR012340 -
Car01g01520 363 Gene3D - 122 263 IPR012340 -
Car01g01520 363 Gene3D - 269 357 IPR012340 -
Car01g01520 363 SUPERFAMILY Nucleic acid-binding proteins 128 251 IPR012340 -
Car01g01520 363 CDD RPA1_DBD_A_like 25 99 - -
Car01g01520 363 SUPERFAMILY Nucleic acid-binding proteins 281 355 IPR012340 -
Car01g01520 363 PANTHER REPLICATION FACTOR A 1, RFA1 10 345 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Car01g01520 363 Gene3D - 10 118 IPR012340 -
Car01g01520 363 PANTHER BNAC01G35430D PROTEIN 10 345 - -
Car01g01520 363 CDD RPA1_DBD_B_like 148 245 - -
Car01g01520 363 MobiDBLite consensus disorder prediction 251 274 - -
Car01g01520 363 Pfam Domain of unknown function DUF223 50 135 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01520 Car-Chr1 30105679 30109838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01520 14 341 Core DNA Replication Machinery Family AT5G08020 22.222 1.66e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01520 - - cam:105852911 540.421