Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01513 ATGGAGACAGTTTCAGTTTCTTCCCCCTCCGAAGGAACTAAGACAAAAGACATCGATGGTCTCCTTGCCGGTGTTGGCTACAAAGTCCGGTCATCAGAGCTACATCAAGTAGCTCAGAATATCGAACGATTAGAGAACGTGATCGTGAACTCATCCAGCGACATTTCTCAAATCGCTTCGGATACTGTCCACTACGATCCCTCCGACATTGGCAATTGGGTGGACAATCTTCTCTCTGAATTTGACCACACTGCCTCTTTACCATACGACTTTTCGGAACTACCAGATCTCGCAGCAGCTCCGCCACAAGACCACCAACTAAAGGTGGTGGCTACCGTCGAAGAAGATTCGGCGATAAAGCTGGTCCACATGCTGATGACGTGTGCCGATTCCCTGCAACGAGGCAACTTACCATTGGCTGGCTCACTAATCGAAGGCATGCAAGGGTTGTTAGCCCACATGAACATCAATTGCGGCATCGGGAAAGTCGCTGGATATTTCATCGATGCTTTGAACCGTCGAATCTTCGGTCAAAACAATATTATCTCTGCTTCACTTTATGAGAACGATGTTCTTTATCATCACTACTACGAGGCTTGCCCTTACCTCAAATTCGCTCACTTCACAGCCAATCAAGCCATACTGGAAGCTTTCAACGGCCACGATTGCGTCCACGTCATTGATTTCAACCTCATGCACGGTCTTCAATGGCCGGCGCTAATTCAAGCTCTTGCGCTTCGTCCTGGTGGACCTCCTTTTCTGCGTCTCACCGGCATTGGTCCGCCGTCGCCGGACGACCGTGACAACCTCCGCGAAATTGGACTGCGGCTCGCTGAACTAGCTCGCTCTGTCAACGTTAGATTTGCGTTTCGTGGAGTTGCGGCATGGCGGCTCGAGGATGTTAAGCCGTGGATGCTTCAGGTGAGTTCTAAGGAAGCTGTGGCGGTAAACTCAATTATGCAGCTTCACCGTCTCCTTGGATCTCAATCCGACCCGATTTCTTCGGGTATTGAAACGGTATTGGGTTGGATCCGGAGTTTGAACCCGAAAATCATGACGGTTGTGGAGCAGGAAGCTAACCATAACAAGGATGGGTTTTTGGAACGATTCACGGAGGCACTACATTATTACTCGACCGTTTTCGACTCGCTCGAAGCGTGTCCGGTTGAACCGGATAAGGCTATGGCTGAGATATATCTGCAGAGGGAGATATGCAACGTGGTGTGTTGCGAGGGACCGGCTCGGATTGAGAGACATGAACCATTGGTTAAGTGGAGGGAGCGGCTCGGGAAAGCCGGGTTCAGACCGCTGCATTTGGGTTCGAACGCGTTCAAGCAAGCCAGTATGCTGTTAACTCTATTCTCTGCGGAGGGTTACTGTGTGGAAGAAAACCAAGGGAGCTTGACATTGGGTTGGCATAGCCGCCCTCTCATTGCAGCTTCGGCTTGGCAAGCTGTTTCTTTGCCAGAGACAGAAACGCTGCGTTTTGACCATTGA 1497 0.505 METVSVSSPSEGTKTKDIDGLLAGVGYKVRSSELHQVAQNIERLENVIVNSSSDISQIASDTVHYDPSDIGNWVDNLLSEFDHTASLPYDFSELPDLAAAPPQDHQLKVVATVEEDSAIKLVHMLMTCADSLQRGNLPLAGSLIEGMQGLLAHMNINCGIGKVAGYFIDALNRRIFGQNNIISASLYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSPDDRDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRLLGSQSDPISSGIETVLGWIRSLNPKIMTVVEQEANHNKDGFLERFTEALHYYSTVFDSLEACPVEPDKAMAEIYLQREICNVVCCEGPARIERHEPLVKWRERLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQAVSLPETETLRFDH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01513 498 Gene3D - 17 81 IPR038088 -
Car01g01513 498 Pfam Transcriptional regulator DELLA protein N terminal 19 85 IPR021914 -
Car01g01513 498 Pfam GRAS domain family 121 484 IPR005202 -
Car01g01513 498 ProSiteProfiles GRAS family profile. 112 484 IPR005202 -
Car01g01513 498 SMART DELLA_2 19 91 - -
Car01g01513 498 PANTHER OS05G0574900 PROTEIN 8 488 - -
Car01g01513 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01513 Car-Chr1 29557993 29561161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01513 18 484 GRAS Transcription Factor Family AT1G14920 49.414 5.54e-163 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car01g01513 GRAS 1.2e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01513 K14494 - gmx:100805968 798.119