Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01499 ATGTGGAATCCATTATCATGGGTTATGGAGTCAGCTGCTATCATGGCCATTGTATTGGCCAATGGAGGGGGAAAGCCACCGGATTGGCAAGATTTCACTGGAATTGTGGTGTTGCTTATCATTAACTCAACCATTAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCCCCCAAAACAAAGGTGTTGAGGGATGGAAAATGGAGTGAGCAAGAGGCAGAAATTTTGGTACCAGGAGATGTGATCAGCATCAAGTTGGGAGACATTGTCCCAGCTGATGCCCGTCTCTTGGAAGGAGATCCTTTAAAGATTGACCAATCTGCCCTCACTGGTGAGTCTTTGCCAGTCACAAGGAACCCTGGTTCAGAGGTTTTCTCTGGCTCAACTTGCAAACAAGGTGAAATTGAAGCAGTTGTTATTGCCACTGGTGTCCATACTTTCTTTGGTAAGGCTGCACACCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACATCCATTGGTAACTTCTGTATCTGCTCAATTGCAATTGGAATGTTGGTTGAGATCATTGTGATGTACCCAATCCAAAATAGAGCTTACAGAGATGGTATTGACAACTTGTTAGTGCTTCTTATTGGAGGTATCCCAATTGCCATGCCAACTGTCTTGTCTGTGACCATGGCTATTGGATCTCACCGCCTTTCTCAGCAAGGAGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCTGGAATGGATGTTCTCTGCAGTGACAAGACTGGAACACTAACACTTAACAAGCTTACTGTTGACAAGAGCTTGATTGAGGTGTTCCCCTCTGGTATGGACAAGGACAGTGTTGTCCTATATGCTGCAAGAGCATCAAGAGTTGAAAACCAGGATGCAATTGATGCTTCAATTGTTGGAATGTTGAGCGATCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTTAACCCAGTTGACAAGCGCACAGCTATTACCTATATTGACAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGCAAATTATTGAGCTTTGTGAACTTAAGGGAGAGACATTGAAAAGAGCACACAAAACCATTGATGGGTATGCTGAGCGCGGCCTGCGTTCGTTGGCAGTTGGTTTCCAGACTGTTTCAGAAAAGAGCAAGGAGAGTGCAGGAGAACCATGGGTGTTCTTGGGTCTCTTACCCCTCTTTGACCCTCCAAGGCATGATAGTGCTGAGACTATTCGTCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGAAAAGAAACTGGTCGTAGACTTGGAATGGGCACCAACATGTATCCTTCATCCTCCCTTCTTGGCCAATGCAAAGATCCAGCCATAGCATCCATGCCAATTGATGAGCTCATTGAGAAGGCTGATGGATTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGTTGCAGGACAGGAAGCACATCTGTGGAATGACCGGAGATGGTGTAAATGATGCACCAGCGTTGAAGAAGGCAGACATCGGTATTGCAGTCGCTGATGCAACTGATGCTGCAAGGAGTGCCTCAGACATTGTCTTGACCGAGCCTGGATTGAGTGTGATTGTGAGTGCTGTGTTGACAAGTAGGGCTATCTTCCAAAGGATGAAGAACTACACAATCTACGCTGTTTCCATCACAATCCGTATTGTTCTTGGGTTCTTGCTCGTTGCTCTAATCTGGAAGTTCGACTTCTCTCCTTTCATGGTTCTGATTATCGCCATCTTGAACGATGGAACCATCATGACCATATCAAAGGATAGGGTGAAGCCATCCCCTGTCCCTGACTCATGGAAGCTTAAGGAAATCTTTGCCACTGGAGTCGTTCTTGGAACATACATGGCCATCATGACCGCAGTTTTCTTCTATATTGTCCATGACACCGATTTCTTCTCTCAAACTTTCGGTGTCCTCCCAATTTCAGACAGTGAGGAACAACTTAACTCAGCTTTATACCTTCAAGTCAGTATTATAAGTCAGGCACTTATCTTTGTGACCAGATCAAGGAGCTGGTCCTTCCTCGAGCGCCCTGGTATGATGCTTCTTGGTGCCTTCGTTGCTGCACAATTGGTGGCAACTGCCATTGCTGTCTATGCACACTGGGACTTCGCTAGAATCAACGGAATCGGGTGGAAATGGGCTGGAGTTATTTGGATCTTTAGCGTTGTCACCTACATTCCTCTTGACATCCTCAAGTTTTTCATCCGCATGGGACTCACTGGCAGTGCTTGGGACAACATGCTCCAAAATAAGACTGCATTCACGACAAAGAAAGACTATGGAAGGGGAGAGAGGGAGGCTCAATGGGCCGTCGCTCAACGCACATTGCATGGTCTTCAACCTCATGAGGCACACAAGAACACCCACCATGAGCATTCTGAAATTGCTGAACAAGCCAAGAGACGTGCTGAGGCAGCTAGGCTGCGAGAGCTACACACACTCAAGGGACATGTTGAATCAGTTGTCAAGTTGAAGGGTCTTGACATTGAAACCATCCAACAACATTACACAGTCTAA 2643 0.4639 MWNPLSWVMESAAIMAIVLANGGGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAEILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGSEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAIGMLVEIIVMYPIQNRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFPSGMDKDSVVLYAARASRVENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRSSKGAPEQIIELCELKGETLKRAHKTIDGYAERGLRSLAVGFQTVSEKSKESAGEPWVFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDPAIASMPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMAIMTAVFFYIVHDTDFFSQTFGVLPISDSEEQLNSALYLQVSIISQALIFVTRSRSWSFLERPGMMLLGAFVAAQLVATAIAVYAHWDFARINGIGWKWAGVIWIFSVVTYIPLDILKFFIRMGLTGSAWDNMLQNKTAFTTKKDYGRGEREAQWAVAQRTLHGLQPHEAHKNTHHEHSEIAEQAKRRAEAARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01499 880 SUPERFAMILY HAD-like 259 569 IPR036412 -
Car01g01499 880 Pfam E1-E2 ATPase 65 242 - -
Car01g01499 880 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Car01g01499 880 Gene3D - 829 880 - -
Car01g01499 880 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 1 740 IPR006534 GO:0008553|GO:0016021|GO:0120029
Car01g01499 880 CDD P-type_ATPase_H 1 775 IPR006534 GO:0008553|GO:0016021|GO:0120029
Car01g01499 880 PANTHER CALCIUM-TRANSPORTING ATPASE 1 860 - -
Car01g01499 880 Gene3D - 66 150 - -
Car01g01499 880 Gene3D - 260 559 IPR023214 -
Car01g01499 880 SFLD p-type atpase 245 574 IPR044492 -
Car01g01499 880 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 779 IPR023298 -
Car01g01499 880 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Car01g01499 880 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Car01g01499 880 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 497 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 35 283 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 PRINTS H+-transporting ATPase (proton pump) signature 694 715 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g01499 880 PANTHER PLASMA MEMBRANE ATPASE 1 860 - -
Car01g01499 880 Gene3D - 28 749 - -
Car01g01499 880 SFLD C1.7: P-type atpase like 245 574 - -
Car01g01499 880 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Car01g01499 880 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Car01g01499 880 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Car01g01499 880 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Car01g01499 880 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Car01g01499 880 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Car01g01499 880 Gene3D - 275 422 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01499 Car-Chr1 27186400 27192647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01499 1 880 Primary Pumps ATPases AT3G42640 87.060 0.0 1551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01499 K01535 - gmx:100798717 1554.27