Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01489 atgttgataaCTGTAAGGGAAGCGTCTCCTTCTCTCCGCTGCTTGTGGCTTAATCCTCTTATACGAAAACCCTCTAAATCATTTTCCATTTGCCGACCCACTTTCTCTGTCCGAACAATCTCTACAACTTCCAACATCTTTACCAGCTGTGACCTAGCAAATTTTGATCCATTGGGTATTAACACAGATACATCTTCTACTTGGAAAAATCTGGTAAGTTTGTTTCCACAAACATTTGAGAGCTCTTCAAGTACAGAAAAGGAAAAATCTAACTCATCTCGAGGAGTAGCAGCTGCAATTGAGGATAGTTCGATTGATTTTGGGGACTTCTTCAAAGGTCCACTTCCAGGAAAGTTTCTAAAGCTTTTAGGGTTTCTTGCCTTGTCAAGGCTTGGTGTGTACATACCTCTAGGCGGTGTTAACAGGGAGGCTTTTCTTGGAAATTTGGATCAGAACAGTTTATTAAGCACTCTCGACTCCTTTTCTGGGGGAGGTATTGGCAGACTTGGGCTATGCTCTCTTGGTATCGTTCCCTTCATCAATGCACAAATTGTTTTTCAGCTTCTTGCTCAAGTATACCCCAAGTTGCAAGATCTTCAAAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTTCAGTACACAAGATATGCTTCAGTTGGATTTGCCATTGTACAGGCGATTGGCCAAGTTCTATTCCTACGTCCGTATGTAAATGACTTTACTACAGAGTGGGCTCTTACTTCTGTTATCTTATTGACACTTGGCTCCGTGTTTACAACATACATTGGGGAACAGATTACTGACCTGAAACTTGGGAATGGTACCTCTCTTTTAATATTCACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAAGCATTTAATGATGCTAACTATGTTGGACTTGCTACCATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGAATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTATTAACTATGCTTCTAGATTCACCAGCAGAAGCAGTGGACTTGAAAAATCTGCTTACTTACCATTTAAGGTAAACAGTTCTGGAGTAATGCCTATCATTTTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACAGGTGTAAGTGCACTAAAAACTGCTGCAGTGGCTTTAAATCCAGGAGGCTCCTTCTATCTTCCATTCAACATATTTTTGATAGCCTTCTTCAACTACTATTACACTTTCTTACAACTGGATCCGGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCTGGCAGAAGTACAGCTACATTTATTAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCGACATTTTTGGCTATCTTGGCTGCTGGACCTGCACTTGTTGAGCAGACCACACACTTGACAGCATTTCGGGGATTTGCCGGAACGTCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCGAGCTGAGATTATATCTCAAAAGTACAAAAACATTGAGTTATATGACTTTGACAAGTATTGA 1581 0.4029 MLITVREASPSLRCLWLNPLIRKPSKSFSICRPTFSVRTISTTSNIFTSCDLANFDPLGINTDTSSTWKNLVSLFPQTFESSSSTEKEKSNSSRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFLGNLDQNSLLSTLDSFSGGGIGRLGLCSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFTTEWALTSVILLTLGSVFTTYIGEQITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYVGLATIIVSFFLLVVGIVYVQEAERKIPINYASRFTSRSSGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGVSALKTAAVALNPGGSFYLPFNIFLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPALVEQTTHLTAFRGFAGTSILILVGCATDTARKVRAEIISQKYKNIELYDFDKY 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01489 526 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 118 515 IPR002208 GO:0015031|GO:0016020
Car01g01489 526 ProSitePatterns Protein secY signature 1. 170 189 IPR030659 -
Car01g01489 526 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 40 524 IPR002208 GO:0015031|GO:0016020
Car01g01489 526 SUPERFAMILY Preprotein translocase SecY subunit 111 509 IPR023201 -
Car01g01489 526 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 40 524 - -
Car01g01489 526 Hamap Protein translocase subunit SecY [secY]. 107 519 IPR026593 -
Car01g01489 526 Pfam SecY 171 502 IPR002208 GO:0015031|GO:0016020
Car01g01489 526 PIRSF SecY_Sec61alpha 93 526 IPR002208 GO:0015031|GO:0016020
Car01g01489 526 ProSitePatterns Protein secY signature 2. 262 279 IPR030659 -
Car01g01489 526 Gene3D SecY subunit domain 110 515 IPR023201 -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 119 137 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 169 189 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 211 234 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 243 268 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 269 292 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 360 379 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 399 421 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 454 472 - -
Car01g01489 526 PRINTS Preprotein translocase SecY subunit signature 488 506 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01489 49 526 Chloroplast and Mitochondria Gene Families AT2G18710 82.988 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01489 K10956 - gmx:100810430 850.506