Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01472 ATGGTGTCTATGATGGATCAATACGAGATCATGGAGCAGATCGGTCGCGGTGCGTTCGGTGCTCCGATTCTCGTTAACGATAAATCGGAGAAGAAGAAATACGTGTTGAAGAAAATTAGGCTTGCAAGGCAAACTGAGCGGTGTAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTAAACACCCTTACATTGTAGAATTCAAGGAGGCTTGGGTTGAGAAAGGTTGTTATGTCTGCATTGTTACTAGATACTGTGAAGGTGGAGACGTGGCTGCATTGATGAAAAAATCAAATGGGGTTTGTTTTTCCTCACGAGAAACTCTGCAAATGGGTTACTCAAATACTTTTGGCAGTAGAATACTTGCATTCAAATTTTGTTTTACACCGTGA 399 0.416 MVSMMDQYEIMEQIGRGAFGAPILVNDKSEKKKYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTRYCEGGDVAALMKKSNGVCFSSRETLQMGYSNTFGSRILAFKFCFTP 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01472 132 Pfam Protein kinase domain 8 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01472 132 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 3 108 - -
Car01g01472 132 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5 3 108 - -
Car01g01472 132 SUPERFAMILY Protein kinase-like (PK-like) 3 113 IPR011009 -
Car01g01472 132 ProSiteProfiles Protein kinase domain profile. 8 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01472 132 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01472 Car-Chr1 25455497 25455895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01472 5 73 Core Cell Cycle Gene Families AT3G48750 36.232 9.78e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Car01g01472 Pkinase 7.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01472 K08857 - pop:7478499 194.897