Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01460 ATGGCTTTTCACCACGACCATCTATCACACGAAATCAACTTCCAACCATTCACGGAAGATCAACAATTAAGTCAAAGCAGGGACATGCAGAGGATGCTACCATTCTCCGGCACCGGATCAGCGCCAACGTGGCTCAACAACGCCGCAACCCTACGGCAGCAAAATTTCCTCCACTTACAACCAGACACATCTCAAAACGACGACGTAAGGGGAATAAACATGATGGAGAAAATCAGGGATCGGAACCGGACGGAAAGTAACAACACCGAATCAGAAGAGTTATCACAATACAAAGCAGACATTCTTGGACATCCTCTCTACGATCAGCTTCTATCAGCTCACGTTTCCTGTTTGAGAATCGCAACGCCGGTTGATCAACTTCCTAGGATCGACGCGCAGCTTCAACAGTCGCAGCGCGTGGTTGACAAGTATTCTACACTTGCTAATGGTGTTGTGGATGAGAAGGAGCTTGATCAATTCATGACACATTATGTTCTCCTGCTTTGTGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGTTGGAGCAGTCTCTGCAAAGCTTGACCGGTGTATCTCCCGGGGAAGGGACTGGTGCAACAATGTCCGACGATGAAGACGACCAAGCAGAGAGCAATGCAAACTTATACGAAGGAAGCCTAGATGGTGGTGATAGTCTCACCTTCGGTCCTCTTGTTCCAACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGACAAGAATTAAAGCACGAGCTAAAACAGGGTTACAAGAACAAGATTGTGGACATAAGAGAAGAAATTCTAAGGAAAAGAAGAGCGGGAAAGCTACCTGGTGATACCACATCCCTTTTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCCTATCCCACAGAAGAAGACAAGGCAAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAGATTAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCTTCTTCCACTGGCTCCAAAACCAAGCGTAAGAGTAGTGGTGCAGGTGAAACCAGTAACCAGAGCTTCATGTGA 1107 0.4544 MAFHHDHLSHEINFQPFTEDQQLSQSRDMQRMLPFSGTGSAPTWLNNAATLRQQNFLHLQPDTSQNDDVRGINMMEKIRDRNRTESNNTESEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSTLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGDSLTFGPLVPTESERSLMERVRQELKHELKQGYKNKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01460 368 Gene3D - 285 361 - -
Car01g01460 368 ProSiteProfiles ELK domain profile. 259 279 IPR005539 GO:0003677
Car01g01460 368 Pfam ELK domain 259 280 IPR005539 GO:0003677
Car01g01460 368 CDD homeodomain 282 343 IPR001356 GO:0003677
Car01g01460 368 MobiDBLite consensus disorder prediction 1 23 - -
Car01g01460 368 MobiDBLite consensus disorder prediction 336 368 - -
Car01g01460 368 Pfam KNOX2 domain 152 201 IPR005541 GO:0003677|GO:0005634
Car01g01460 368 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Car01g01460 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 361 - -
Car01g01460 368 MobiDBLite consensus disorder prediction 201 221 - -
Car01g01460 368 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Car01g01460 368 SUPERFAMILY Homeodomain-like 281 345 IPR009057 -
Car01g01460 368 SMART HOX_1 281 346 IPR001356 GO:0003677
Car01g01460 368 Pfam KNOX1 domain 97 138 IPR005540 GO:0003677|GO:0005634
Car01g01460 368 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 30 361 - -
Car01g01460 368 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Car01g01460 368 SMART ELK_2 259 280 IPR005539 GO:0003677
Car01g01460 368 SMART KNOX2_2 147 202 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01460 Car-Chr1 24781986 24788851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01460 95 365 Homeobox Transcription Factor Family AT5G11060 83.636 6.50e-167 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car01g01460 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01460 - - gmx:100816347 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01460 01 24781986 24788851 Car01g01460 01 24781986 24788851 ECH
Car07g00670 07 5878495 5883683 Car01g01460 01 24781986 24788851 PCT