Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01436 ATGGGGAGGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAGAATGGGAATCATAGCAATGTCGAGGATAAAAGCCCGAATGCGTATGATAATGATACCTTGGTGTTTATATCCATGGCTCAAGAGTTGAAGGAAGAAGGTAACAAGATGTTCCAAAAGAGGGATGTTCAAGGAGCTTTGGTGAAGTATGAGAAAGCTCTCAAATTGCTTCCAAGAAATCATATAGATGTTTCGTATTTGCGGAGTAACATGGCTGCGTGCTATATGCAGATGGGACTTGGTGAGTATCCTAGGGCAATTAATGAATGCAATTTGGCTCTTGAAGTTACTCCTAAATATACTAAAGCTTTGTTGAAAAGATCAAGGTGTTATGAGGCTTTGAATAGATTGGATTTAGCATTGAGAGATGTTAGTAGTGTCTTGAAGACGGAGCCGAATAATATCATGGCGTTGGAGATCTCAGATAAGGTGAAACATGCGCTTGAAGTTAAAGGGCTAAGAGTGAATGATGAGCAAATAGAGTTGCCTCCGGATTATGTTGAAACTCCTTACGCCTTGCCTTCTGAAAAGGTAGTGAAAGAAAAGAAACACAAGAAGAAGAGCAAAAAAGATAAGGTTAAGGCTACCAATGAAGTTGTAGAAAATCAAGTTGAGGAGAAACAAGAAGAGAAGAAAGATGAGGACAATATTGTGGCAAATAAAGCTGAGGATGAGCAGAAAGAGAAAAAGGCTAATAAATCTAAAAAGAAGGCGGCAAAGGAAAAAATTGATAAGCAGAAAGATGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGTGAAGATGTACTTAAGAAAACAGCAAAACTTGTTTTTGGCGATGATATAAGATGGGCTCAGTTGCCGATTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGCGACCGGTTCCCAAGCCTAGGAGCACTTCTTGTCAAATATAGAGATCAAGAAGGTGATTTGGTCACAATCACTTCTGATGAAGAATTAAAGTTGGCTGAAACAGGATCACAACAAGGTTCTGTTCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCATTCTACGAGAAACTTCATGTGAAGGATGTGGAAAAGGTTGACATTGATAATGCTCCTAAGAATGGTTGTGCGGTGAAATCAAACGAAATCATTAGCTCATCTTGTGTTGAGGATTGGATAATTCAGTTTGCACAATTGTTCAAGAATCACGTTGGATTCGAGTCCGACCGGTATTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCGGTGGAGGAGATGGTTACAAGTGAAGAAGCACAAGGACTATTTGACATGGCGGGAGGTAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCAAGGGCAAGGAAGAAAGTTTATTTAACCGAAGATTCTTCTAAAGAGCATATCATTGAACAAATCAAAAGTTCATATGAATGGGCGCAGAAAGAGTACACAAAAGCTGGAGAAAAATACGAAGCAGCCATCAAAATTAAGTCAGATTTTTATGAAGGCTTCCTTGCTCTAGGTCAGCAGCAGTTCGAACAAGCTAAACTTTCTTGGTATTATGCACTCAGTTGTAATATAAATTTAGCAACACCGCCGTCTACAGAGATTCTTCAGCTTTACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGATATGGGAAGAATCACAAGAGCAGCAGTTGAGAGACATTAGTTTACATACGCATAATTTCAGGTTGGACGGGCTACTAAAAAACATTTCATCAGATGAAACTGCTACAATGGCGGCAAACATGAGGTCTCAGATAAATCTCTTGTGGGGCACCATGCTATACGAACGCTCAATTGTGGAACTCAAATTAGGGTTACCTGTATGGCATGAATCTTTGGAAGTTGCAGTTGAGAAGTTTGAAAATGCAGGAGCTTCTCCCACAGATATAGCTGTAATGTTGAAAAATCACTGTTCAAATAACACTGCTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACGAAGCTAAAAAGTTGCAGAAAGGAGTTTTGTCGTTTCGTTTGGAACCTTTGTTCAGAAGAAGAGTATCGAAAATTTACCACGCCTTTGAGCTTGTGTGA 2190 0.3927 MGRKKKQVGETSEENGNHSNVEDKSPNAYDNDTLVFISMAQELKEEGNKMFQKRDVQGALVKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLGEYPRAINECNLALEVTPKYTKALLKRSRCYEALNRLDLALRDVSSVLKTEPNNIMALEISDKVKHALEVKGLRVNDEQIELPPDYVETPYALPSEKVVKEKKHKKKSKKDKVKATNEVVENQVEEKQEEKKDEDNIVANKAEDEQKEKKANKSKKKAAKEKIDKQKDDVKEVNEEKSNGRSEDVLKKTAKLVFGDDIRWAQLPINCSLFQLREVICDRFPSLGALLVKYRDQEGDLVTITSDEELKLAETGSQQGSVRLYIVEANPNHDPFYEKLHVKDVEKVDIDNAPKNGCAVKSNEIISSSCVEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEEMVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEDSSKEHIIEQIKSSYEWAQKEYTKAGEKYEAAIKIKSDFYEGFLALGQQQFEQAKLSWYYALSCNINLATPPSTEILQLYNSAEENMEKGMLIWEESQEQQLRDISLHTHNFRLDGLLKNISSDETATMAANMRSQINLLWGTMLYERSIVELKLGLPVWHESLEVAVEKFENAGASPTDIAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVLSFRLEPLFRRRVSKIYHAFELV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01436 729 Gene3D Tetratricopeptide repeat domain 37 166 IPR011990 GO:0005515
Car01g01436 729 MobiDBLite consensus disorder prediction 205 275 - -
Car01g01436 729 MobiDBLite consensus disorder prediction 1 20 - -
Car01g01436 729 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Car01g01436 729 ProSiteProfiles PB1 domain profile. 280 358 IPR000270 GO:0005515
Car01g01436 729 SMART PB1_new 280 358 IPR000270 GO:0005515
Car01g01436 729 MobiDBLite consensus disorder prediction 1 28 - -
Car01g01436 729 Gene3D - 281 358 - -
Car01g01436 729 SUPERFAMILY TPR-like 39 152 IPR011990 GO:0005515
Car01g01436 729 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Car01g01436 729 PANTHER PROTEIN CLMP1 3 728 IPR044517 -
Car01g01436 729 MobiDBLite consensus disorder prediction 192 275 - -
Car01g01436 729 CDD PB1 288 355 - -
Car01g01436 729 PANTHER PROTEIN PHOX3 3 728 - -
Car01g01436 729 Coils Coil 203 276 - -
Car01g01436 729 Pfam PB1 domain 282 356 IPR000270 GO:0005515
Car01g01436 729 SMART tpr_5 78 113 IPR019734 GO:0005515
Car01g01436 729 SMART tpr_5 114 147 IPR019734 GO:0005515
Car01g01436 729 SMART tpr_5 40 73 IPR019734 GO:0005515
Car01g01436 729 SUPERFAMILY CAD & PB1 domains 278 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01436 Car-Chr1 23477671 23482857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01436 23 147 Calmodulin-binding Proteins AT3G25230 33.094 4.65e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01436 - - gmx:100820306 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01436 01 23477671 23482857 Car01g01436 01 23477671 23482857 ECH
Car07g00689 07 6045897 6049166 Car01g01436 01 23477671 23482857 PCT