Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01431 ATGATGAAACCTCTTGCACAATTCTCACAAATTTTGAGTGTTTTGTATGAAGATGTTAGAGGTGCAGGGTTCATAGCACAAGACATTTCCTTCAGGAACACTGCTGGACCCGAAAATGAGCAAGCAGTGGCTCTACGCTCAGACTCTGACTTATCTGTCTTCTATAGATGTGGAATCTTTGGTTATCAAGACAGTTTACTTGCCAACATCAATCGCCAATTTTACAGAGAGTGCAAAATTAGTGGAACTATAGACTTCATATTTGGACCATGGCACCCATATTCAACCACGGTTTTCATGCAAACTTATATGAACGAGGTATTGAATCCTAAAGGGTGGCTAGAATGGAATTCATCTCAATATTTGGATACATTGTATTATGCAGAGTATAATAATTATGGTCATGGAGCTAATCTACAAAGTCGAGTGAAATGGTCAGGCTTTCACGTGTTAAATGATTCTAGTCAGGCTACTAATTTCACCGTGTCTACATTAATTTTAGGAGACCAATGGCTACCTTCAACAGGTGTACCTTTTATCGGTGCATTTGAGAATCAAACCACTATTTAA 570 0.3842 MMKPLAQFSQILSVLYEDVRGAGFIAQDISFRNTAGPENEQAVALRSDSDLSVFYRCGIFGYQDSLLANINRQFYRECKISGTIDFIFGPWHPYSTTVFMQTYMNEVLNPKGWLEWNSSQYLDTLYYAEYNNYGHGANLQSRVKWSGFHVLNDSSQATNFTVSTLILGDQWLPSTGVPFIGAFENQTTI 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01431 189 SUPERFAMILY Pectin lyase-like 19 180 IPR011050 -
Car01g01431 189 PANTHER PECTINESTERASE 90 180 - -
Car01g01431 189 PANTHER PECTINESTERASE 19 89 - -
Car01g01431 189 Pfam Pectinesterase 19 89 IPR000070 GO:0030599|GO:0042545
Car01g01431 189 Pfam Pectinesterase 90 169 IPR000070 GO:0030599|GO:0042545
Car01g01431 189 Gene3D - 90 184 IPR012334 -
Car01g01431 189 Gene3D - 16 89 IPR012334 -
Car01g01431 189 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 90 180 - -
Car01g01431 189 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 19 89 - -
Car01g01431 189 ProSitePatterns Pectinesterase signature 2. 80 89 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01431 Car-Chr1 23334152 23334913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01431 19 185 Carbohydrate Esterase AT3G05620 42.793 3.52e-50 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01431 K01051 - gmx:100810815 236.884