Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01420 ATGAAGCAGTCTTTTGATCACTCTTTTTTCGGGCCTTCCAAGATTCCACCTATTAATGTACCTGGAAACTCGGGGCATGGGACGTTGGAAGTTTTATCTGGATCTGATTCATACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAACTTAAATGAAGCTGAAAATGGTTTTCAATCTGTTGACGACATTTCACCTGGCTTTAAAAAGTGTCATCAAGTGGTAGAGTTGAATGGTTCCCTTGAAGATGATAATAATCATGAAATTGGAAGCATGCTTCCTGATGATGATGATGAGCTTTTGGCTGGCATAATGGATGATTTTGACTTAAGTGGTTTACCTGGTTCCCTTGAAGATTTGGAGGAGTATGATCTTTTTGGTAACAGTGGAGGTTTGGAACTAGAAAATGATCCAAAGGAAAGTCTCAGTGTTGGAATATCTAATTTAAGCTTCTCTGATAGCTCTGTCGGCAATGGTTTGCCTAATTTTTCTTTACCTAATGGTGCGGGAGGCGGAGCTGTTGCCGGAGAACATCCATATGGAGAACATCCTTCTCGAACATTGTTTGTCCGAAATATTAACAGTAATGTCGAGGATTCCGAGCTGCGGACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGGTTTGTAATGATATCCTATTATGATATCCGGGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTTTGCGGCGGAGGAAACTTGATATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCGTCGGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGATTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCTTTAAATAGGAGTGACATAGCTGGTAAGCGCATTAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCTTGACCAAGATGAGTCTCGAAGTTTTCGACATCAAGTGGGTTCTCCTCTAGCCAACTCTCCGCCAGGTAGTTGGTTACAGTTCAACAGCCCTGTCGAGCAGAGTTCATTGCCAACTATGAACCATTCTCCTAGTTCTAGAATCATGAGCCCAACAACCGGAAATAGTTTACCAGGATTAGCTTCAATTTTGCAATCACAGGTATCAAACACAGTGAAGGCTGCAACTATTGGCAAGGACATAGGAAGTAATCACAGAGACCACCGAATTCCCAATATGAATTCATCCTCTGGATCTACTTTTAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGCGGATCATTGTCCTCGCTTGGTGCATCAACATCTAATGGATCTTCAGTGGAAACCTTGTCCGCTCCACAGTTTCTATGGGGAAAACCAAACCCTTACTCAGAGCATACCAAACCTTCGTCTTTGCCAAGACCATCTGTTGGACATTTACTTAGTACATCGAATGGAATGAGTCGTGCTTTCCCATACTCAAGTCAGAACAATCCCTTTGTCAGTACGTCCCAACATCATCATCACGTAGGTTCTGCTCCATCAGGTTTGCCTGTTGAGAGGCACTTCGGTTTTTTTCCCGAGTCACGTGAAACTTCATTGATGAATAATGTTGGCTATAGAGGCATGAGTTTAGGGCAGAATGATGGAAATTATGTGCTTAATGTGTGTGGATCTGGTAATGCTGGTGTTTCTATTCCAAGAAGTATGCCTGAAAACGGTTCATCAAACTTCAGAATGAGATCTTCTCCTATACTTAGTCCAGTATTTTTGGGTAGCGGTCCTTATCCAGGACTACTAACTACTGCTATGGAGAGTTTGACTGACCATGTTAGGAGTAGATGGATAGAGAACAATGGAAGCCAAGTTGACAACAAGAAGCAATTTCAGCTTGACTTGGATAAGATCAAAAGCGGTGAAGATACAAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTAGCTGCAATTGATGAAAATCACAAGGGTACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAACGTTGGTTATGCATTTATCAACATGCTGTCACCCTCGCATATTATTCCATTCTACGAGACATTAAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCATTTGCTCGAATCCAAGGAAAGAATGCTCTTGTGAGCCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTCTTCCACTCAGATGGTTCTGAAGTTAATGATCAGATCATACAAGAGCATCTTCCCTCCAATTCCAACAACATATATATTCAGGCAGTTAAGTCAGGTGAATTACAATTAAGCTATTCTCTCGGATACCCTCCAAAGGACGGTCCTCCTGTGAGTTTGGATGCAAATTAA 2586 0.4095 MKQSFDHSFFGPSKIPPINVPGNSGHGTLEVLSGSDSYHASSDASLFSSSLPVLPHEKLNLNEAENGFQSVDDISPGFKKCHQVVELNGSLEDDNNHEIGSMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDLFGNSGGLELENDPKESLSVGISNLSFSDSSVGNGLPNFSLPNGAGGGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGDYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRHQVGSPLANSPPGSWLQFNSPVEQSSLPTMNHSPSSRIMSPTTGNSLPGLASILQSQVSNTVKAATIGKDIGSNHRDHRIPNMNSSSGSTFNSHSLPEPKFSQYRGSLSSLGASTSNGSSVETLSAPQFLWGKPNPYSEHTKPSSLPRPSVGHLLSTSNGMSRAFPYSSQNNPFVSTSQHHHHVGSAPSGLPVERHFGFFPESRETSLMNNVGYRGMSLGQNDGNYVLNVCGSGNAGVSIPRSMPENGSSNFRMRSSPILSPVFLGSGPYPGLLTTAMESLTDHVRSRWIENNGSQVDNKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIPFYETLNGKKWEKFNSEKVASLAFARIQGKNALVSHFQNSSLMNEDKRCRPILFHSDGSEVNDQIIQEHLPSNSNNIYIQAVKSGELQLSYSLGYPPKDGPPVSLDAN 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01420 861 CDD RRM3_MEI2_like 698 783 IPR034454 -
Car01g01420 861 MobiDBLite consensus disorder prediction 447 476 - -
Car01g01420 861 Gene3D - 280 379 IPR012677 -
Car01g01420 861 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Car01g01420 861 SUPERFAMILY RNA-binding domain, RBD 697 781 IPR035979 GO:0003676
Car01g01420 861 MobiDBLite consensus disorder prediction 369 422 - -
Car01g01420 861 MobiDBLite consensus disorder prediction 456 476 - -
Car01g01420 861 SMART rrm1_1 282 350 IPR000504 GO:0003723
Car01g01420 861 SMART rrm1_1 697 773 IPR000504 GO:0003723
Car01g01420 861 SMART rrm1_1 197 265 IPR000504 GO:0003723
Car01g01420 861 CDD RRM1_MEI2_like 195 271 IPR034453 -
Car01g01420 861 Gene3D - 185 279 IPR012677 -
Car01g01420 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 835 - -
Car01g01420 861 Pfam RNA recognition motif 2 695 791 IPR007201 -
Car01g01420 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Car01g01420 861 MobiDBLite consensus disorder prediction 378 422 - -
Car01g01420 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Car01g01420 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Car01g01420 861 MobiDBLite consensus disorder prediction 1 22 - -
Car01g01420 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Car01g01420 861 PANTHER PROTEIN MEI2-LIKE 2 2 835 - -
Car01g01420 861 CDD RRM2_MEI2_like 280 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01420 Car-Chr1 22428390 22434819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01420 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 1.50e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01420 - - gmx:100800877 1375.53