Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01415 ATGAGTTTTGGAAGCAAAGAAAAATTGAAAGCCACAAGCTTGACTGCATCAGTTGAAAGCAAGATGAAAACCATCAACAACAATGATAATAACAAACTTGCTCAGTACACTGCAGATGCTGAGATTCTTGCTGAGTTTGAACAATCTGGTGTTTCTGGAAAATCATTTGACTATTCAAAACAACTTCTTGATCCTCCCAGGTTAGTTTCTGAAGAGAAAATAACTGCTTATTTGTCTAAACTCCAAAGGGGTGGTCTTATTCAACCCTTTGGTTGTATGGTAGTAATCGAAGAACCAAGTTTTAGAATCATTGGTTATAGTGAAAATTGCTTTCAATTGTTGGGTTTGAACATTGAAATTGGTTCAGAACAGTTTTTGGGTCTACTTGATGTTGATGCTACAACACTGTTCACACCTTCTTCTGGTGCTTCCCTTATAAAAGCTGTTTCTTCAAGGGAAATTTCACTTTTGAACCCAATTTGGGTCCATGCAAGAACAACCCAGAAACCATTTTATGCTATACTTCATAGGATTGATGTTGGTGTTGTGATTGATTTGGAGCCTGCTAGGTCTAGTGGTCCTGCATTGTCCCTTGCTGGTTCTGTTCAGTCACAGAAACTTGCTGTTAGAGCAATTTCAAGGCTTCAATCATGTCCTGGTGAAGACATTGGTTTGTTGTGTGATACTATTGTTGAGGAAGTTCAGAAACTTACTGGTTATGATAGGGTTATGATTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTGTCTGAGATTAGGAGGTCTGATTTAGAACCTTATTTGGGTTTGCATTATCCGGCTACAGATGTTCCTCAAGCTGCTCGATTTTTGTTCAAGCAGAATCGGGTCAGGTTGATTTTCGATTGTTATGCTAATTCGGTTAAGGTCATTCAGAGTCATGAGTTAAAGCAACCTCTTTGTTTGGTTAAATCGACACTTAGGTCACCACATGAGTGTCACAAAGAGTACATGGCTAATATGGGTTCAATCGCTTCTCTTGTGATGGCGATTGCTGTTAATGGAAATGATTCGACGAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCGCCGCGCCATGTGCCTTTCCCGGTTCGATATGCTTGTGAGTTCTTAATGCAGGCTTTTGGGCTGCAGCTTTTCATGGAGATTCAATTGGCCTCACAGATGGCAGAGAAGAAAGTTCTTAAAACACAAACTATGTTGTGTGATATGCTTCTACGCGATGCACCGTTCGGCATTGTGACTCAATCCCCGAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCATTGTATTATGATGGAAAGTGTTGGTTGTTAGGCACAACTCCAACTGAATCACAGGTGAAAGATATTGTGGAATGGCTGCTTAGTAATCACGGTGACTCGACAGGTTTGACAACAGATAGTTTGGCTGATGCAGGTTATCCGGGTGCTACTTTACTTGGGGATGCAGTTTGTGGCATGGCTACGGCGAGAATCAATTCGAGACATATCTTGTTATGGTTCAGATCTCATACTGCTAACGAAATGAAGTGGGGAGGAGCGAAACATCATCCGGAGGATAAGGATGATGGAGGAAAAATGAACCCGAGAATGTCGTTTAAGGCTTTTCTCGAAGTAGTTAAAAGCAAAAGTTCTCCTTGGGAAGTATCTGAAATCAACGCGATTCACTCGTTGCAACTAATCATGCGAGATTCGTTCCAAGACACAGACAACACCAGTCCGAAGATTCTAAATTATTTTAACAAAAGTGACAGTCCAATGGGAAAGATGCTTGATACTGAGAAAAGTGACAGTCCAATGGGAGGGATGCATGAACTAAGTTCAGTAGCCGTTGAAATGGTAAGATTAATTGAGACAGCGACAGTCCCAATTTTTGGGGTTGATTCAGATGGCATGATCAATGGATGGAATGTAAAAATTGCTGAATTGACAGGTCTACATGCCAATCAAGCTATGGGAAAATCCCTAGCAAATGAAGTAGTACATGATGACTCACGCGAAACTCTGACAAATATTCTGAGTAGAGCTTTGCGAGGCCAAGATGAAAAAAATGTTGAGTTGAAAATAAAGCACTTTGGAGTTCATCAAGAAAAGGAAGTTGTATATCTCATGGCGAGTTCCTGCACAAGTAGGGACTACACAAATGCTGTTGTTGGAGTATGCTTTGTAGGTCAAGACATCACATTAGAGAAAGTGGTACTGGATAAATTCATCAAGATGGAAGGTGATTACAAAGCGATTATGCAGAGTCTTAATCCGCTAATTCCACCTATATTTGCTTCTGATGAGAATGCATGCTGCTCTGAATGGAATGCAGCAATGGAAAGGCTAACCGGATGGAAAAGAGATGAGATCATAGGAAAAATGCTTCCAGGAGAAATCTTCGGAAGTTTATGTCGGTTGAAAGGTCAAGAATCACTAACTAATTTTATGATTTTAGTGTATCGCGGAATAAGTGGTCAAGATTCTGAGAAGTTGCCGTTTGGATTTTTTGATAAAAATGGAGAGTTTATAGAGACTTATATAACAACAAACAAAAGGACAGATGCAGCTGGTGATATAATTGGCTGTTTCTGTTTCTTGCAGATTGTAACCCCGGATTCGAATCAAAACTCTCAAGGACACAGGTCTAAAGAAAGAGAAAGCGTTTCAAAATCTAAGGAGTTAACTTATATACTACATGAGATGAAGAATCCTTTAAATGGTATTCGATTCACGCACAAGCTTTTGGAAAATACAGATGTCTCCGAAAACCAGAAACAATTCCTTGACACTAGTCAAGCATGTGAAAGACAAATAATGGCAATTATGGAGGATACAGATTTAGAAAGTATTAATGAAGGCACTTGGCAGCTAAATATGGAAGAATTTCTTCTAGGAAATATTTTAGACGCCGTTGTAAGCCAAGTAATGATGTTGATAAAAGGAAAGGACTTACAGTTGTTTCATGAAATTCCCGATGAAATCAAAACGCTTTCACTTTATGGCGATCAAATTAGACTTCAGGTGGTCTTGTCTGACATCTTGCTCAATATAGTTACGCACACACCATCTCCAAATGGCTGGATAGAAATCAAGATTTCACATGGTTTGAAAATAATACAGGATGGCAATGAGTTTATCCATCTAAAGTTCAGAATGACTCATTCAGGAAGAGGTCTTCCTTCTTCGGTTCTACACGATATGTTTGAAGGCGGCGGGAATCAATGGAGTACACAGGAAGGTCTAGGGCTATATATGTCAAGGAAAATCCTGAGCAGGATGAATGGTGATGTCCACTATGTAAGAGAACAAAATAAGTGTTATTTTCTCATTGACCTTGAACTAAGAACAAGAAAAGAAAGGCCAAGAAATTTGCAAACAGAGGCAACCATGCTAACTTAG 3417 0.3968 MSFGSKEKLKATSLTASVESKMKTINNNDNNKLAQYTADAEILAEFEQSGVSGKSFDYSKQLLDPPRLVSEEKITAYLSKLQRGGLIQPFGCMVVIEEPSFRIIGYSENCFQLLGLNIEIGSEQFLGLLDVDATTLFTPSSGASLIKAVSSREISLLNPIWVHARTTQKPFYAILHRIDVGVVIDLEPARSSGPALSLAGSVQSQKLAVRAISRLQSCPGEDIGLLCDTIVEEVQKLTGYDRVMIYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDVPQAARFLFKQNRVRLIFDCYANSVKVIQSHELKQPLCLVKSTLRSPHECHKEYMANMGSIASLVMAIAVNGNDSTRLWGLLVCHHTSPRHVPFPVRYACEFLMQAFGLQLFMEIQLASQMAEKKVLKTQTMLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGKCWLLGTTPTESQVKDIVEWLLSNHGDSTGLTTDSLADAGYPGATLLGDAVCGMATARINSRHILLWFRSHTANEMKWGGAKHHPEDKDDGGKMNPRMSFKAFLEVVKSKSSPWEVSEINAIHSLQLIMRDSFQDTDNTSPKILNYFNKSDSPMGKMLDTEKSDSPMGGMHELSSVAVEMVRLIETATVPIFGVDSDGMINGWNVKIAELTGLHANQAMGKSLANEVVHDDSRETLTNILSRALRGQDEKNVELKIKHFGVHQEKEVVYLMASSCTSRDYTNAVVGVCFVGQDITLEKVVLDKFIKMEGDYKAIMQSLNPLIPPIFASDENACCSEWNAAMERLTGWKRDEIIGKMLPGEIFGSLCRLKGQESLTNFMILVYRGISGQDSEKLPFGFFDKNGEFIETYITTNKRTDAAGDIIGCFCFLQIVTPDSNQNSQGHRSKERESVSKSKELTYILHEMKNPLNGIRFTHKLLENTDVSENQKQFLDTSQACERQIMAIMEDTDLESINEGTWQLNMEEFLLGNILDAVVSQVMMLIKGKDLQLFHEIPDEIKTLSLYGDQIRLQVVLSDILLNIVTHTPSPNGWIEIKISHGLKIIQDGNEFIHLKFRMTHSGRGLPSSVLHDMFEGGGNQWSTQEGLGLYMSRKILSRMNGDVHYVREQNKCYFLIDLELRTRKERPRNLQTEATMLT 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01415 1138 ProSiteProfiles PAS repeat profile. 620 691 IPR000014 -
Car01g01415 1138 CDD PAS 765 873 IPR000014 -
Car01g01415 1138 Gene3D - 203 553 IPR029016 -
Car01g01415 1138 Gene3D PAS domain 81 325 - -
Car01g01415 1138 Pfam GAF domain 222 392 IPR003018 GO:0005515
Car01g01415 1138 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 222 382 IPR016132 -
Car01g01415 1138 Gene3D - 397 570 IPR043150 -
Car01g01415 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 81 191 IPR035965 -
Car01g01415 1138 PRINTS Phytochrome signature 137 159 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 237 256 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 322 343 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 422 442 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 507 526 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 540 558 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 623 639 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 642 657 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 716 733 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 PRINTS Phytochrome signature 736 756 IPR001294 GO:0006355|GO:0009584
Car01g01415 1138 TIGRFAM sensory_box: PAS domain S-box protein 627 741 IPR000014 -
Car01g01415 1138 ProSiteProfiles PAS repeat profile. 754 806 IPR000014 -
Car01g01415 1138 SUPERFAMILY GAF domain-like 400 578 - -
Car01g01415 1138 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1118 IPR003594 -
Car01g01415 1138 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1118 IPR036890 -
Car01g01415 1138 Gene3D PAS domain 621 742 - -
Car01g01415 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 768 870 IPR035965 -
Car01g01415 1138 SMART HisKA_10 895 959 IPR003661 GO:0000155|GO:0007165
Car01g01415 1138 PIRSF Phytochrome_conventional 8 1129 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Car01g01415 1138 Pfam Phytochrome region 405 579 IPR013515 GO:0006355|GO:0009584
Car01g01415 1138 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 894 950 IPR036097 GO:0000155|GO:0007165
Car01g01415 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 626 734 IPR035965 -
Car01g01415 1138 CDD HATPase_Phy-like 1006 1120 IPR044767 -
Car01g01415 1138 Gene3D PAS domain 767 878 - -
Car01g01415 1138 SMART pas_2 622 689 IPR000014 -
Car01g01415 1138 SMART pas_2 756 823 IPR000014 -
Car01g01415 1138 ProSiteProfiles Histidine kinase domain profile. 902 1122 IPR005467 -
Car01g01415 1138 CDD PAS 631 738 IPR000014 -
Car01g01415 1138 ProSitePatterns Phytochrome chromophore attachment site signature. 322 331 IPR013516 -
Car01g01415 1138 Pfam PAS fold 76 189 IPR013654 GO:0006355
Car01g01415 1138 CDD HisKA 895 950 IPR003661 GO:0000155|GO:0007165
Car01g01415 1138 SMART gaf_1 222 402 IPR003018 GO:0005515
Car01g01415 1138 SMART HKATPase_4 1007 1122 IPR003594 -
Car01g01415 1138 Pfam His Kinase A (phospho-acceptor) domain 895 959 IPR003661 GO:0000155|GO:0007165
Car01g01415 1138 SUPERFAMILY GAF domain-like 202 388 - -
Car01g01415 1138 Pfam PAS fold 754 873 IPR013767 GO:0006355
Car01g01415 1138 Pfam PAS fold 623 738 IPR013767 GO:0006355
Car01g01415 1138 Gene3D - 879 957 - -
Car01g01415 1138 Gene3D - 958 1125 IPR036890 -
Car01g01415 1138 PANTHER PHYTOCHROME E 29 1127 - -
Car01g01415 1138 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 1127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01415 Car-Chr1 22342516 22347818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01415 15 1122 Histidine Kinase Gene Family AT4G18130 61.875 0.0 1438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01415 K12123 - gmx:100808192 1846.63