Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01397 ATGAGTTGTTTGGCAACACCATCTTTTCTTGCTAATCAATTTATTCCATTTTCTACTGCTATTACTAATTCTGCTATGAGCTCCAAATTGGGAGCCAGTTTTCATAGAATATACAAAAGTAAAACCAAAGAAAAGTTCTGTCTGTCTTTCTCTAGGGATAATTATGAAGTTGGAAGTAATTTTGCAATCAAATTAAGCAGAGAAGTATCTTATTCCCAAACCCAACAAGAACATGGAACTTGGGAAGAACCAgatattgatagtgacagtgacattgagagtgaGTATGGTGATGAAGAAGATGAGAGCCTTGGATTTGAAAGTGATGGGGAAGAGGAAGAGACAAAGACTTCAGCTATTACCGGTGTTAATATTACCTCACAGGATGAGTATGAGGAGCAAATTAAGAAAGAGGTTGAACAGCTCTTGGAACCGGAAGAAAGAGAAATATTGCAACAAAATCCAACTCCTAACTTGAAAAATATATCATCTGAAAAATGGAGCCCACTGCACTCTCTTGCGCTATCAATGCAGATTAGTAGCATGGATAAGCTTCTTGAAAATGGTTATGATATTGATTTCCTTAATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAAGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGATGTCAATGTTGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCATTCAAAGCAGGAATAGAGATATTGCGAAAATTTTGTTAGTCAATGGTGCTGATAGGTTAACAAAAAATAAGGATGGAAAAACAGCACTGAATCTAAGCTTATGCTATGGGAAAGATTTCATGTCTTATGACCTTGCTAGATTAGTGAAGGTAGTTCCAGTCAACAAAGTTCTATAA 993 0.3535 MSCLATPSFLANQFIPFSTAITNSAMSSKLGASFHRIYKSKTKEKFCLSFSRDNYEVGSNFAIKLSREVSYSQTQQEHGTWEEPDIDSDSDIESEYGDEEDESLGFESDGEEEETKTSAITGVNITSQDEYEEQIKKEVEQLLEPEEREILQQNPTPNLKNISSEKWSPLHSLALSMQISSMDKLLENGYDIDFLNKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAIQSRNRDIAKILLVNGADRLTKNKDGKTALNLSLCYGKDFMSYDLARLVKVVPVNKVL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01397 330 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 76 322 - -
Car01g01397 330 Pfam Ankyrin repeats (3 copies) 215 290 IPR002110 GO:0005515
Car01g01397 330 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Car01g01397 330 ProSiteProfiles Ankyrin repeat profile. 198 230 IPR002110 GO:0005515
Car01g01397 330 SUPERFAMILY Ankyrin repeat 149 309 IPR036770 -
Car01g01397 330 ProSiteProfiles Ankyrin repeat region circular profile. 198 230 - -
Car01g01397 330 MobiDBLite consensus disorder prediction 86 109 - -
Car01g01397 330 ProSiteProfiles Ankyrin repeat region circular profile. 264 290 - -
Car01g01397 330 SMART ANK_2a 165 194 IPR002110 GO:0005515
Car01g01397 330 SMART ANK_2a 198 227 IPR002110 GO:0005515
Car01g01397 330 SMART ANK_2a 231 260 IPR002110 GO:0005515
Car01g01397 330 SMART ANK_2a 264 294 IPR002110 GO:0005515
Car01g01397 330 Gene3D - 128 231 IPR036770 -
Car01g01397 330 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Car01g01397 330 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 76 322 - -
Car01g01397 330 Gene3D - 232 310 IPR036770 -
Car01g01397 330 ProSiteProfiles Ankyrin repeat region circular profile. 231 263 - -
Car01g01397 330 MobiDBLite consensus disorder prediction 74 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01397 Car-Chr1 21538676 21542247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01397 182 305 Ion Channels AT2G25600 28.387 6.34e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01397 - - lja:Lj0g3v0067589.2 463.766