Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01396 ATGGGTCGTCCAAAAACAAATTTGAAACGCATTCAAAATGAGAAAGTTCGAAAAACAACTTTCGTTCACCGAAAGAATGGATTATCAAAGAAAGTTTCGGAATTTTCAAGCATATTTGGAGCTGAAGTTTGCTTAATTGTGTATGATAGTGATGGTAGTGATATACCAATGACTTTTCCAGAAAATGCCACAACTGTACAATCTATGCTTAAAAAGTATGAGCATCAAAAGATTGAGACTACTCTTGAGGAATTTGGCGTCAAAGACTACTATGCCAATAAGAAGAATTTAGTCGAAGCCGAGATTTCCAGAGTGCGTAAGGAGATCCTCAAGAAAAAGTATCCAACTTCGAGCCCAATTTTTCATAACATGGAAGAGGAGCAACTCAAAGCTTTCATTGCTTTTGTAGATTCCAAGATTGAAGCTTGTAATCACATGCTGAAAAATATGCAACAAAAAGACACTTGCTTCGTACAAAACATGGCTCAAGATAGTGATGTCTGCTTACATTCAAGTCAAGATAATGTAGTAATGCATAACCTTCCTCAAATGCAACATATTACTGATTTTATGGAACCAACCAATGATGATATTAGTGAGTGGATAGATTTCAGTGATCTTTCTGATTTGCCACCAGTTTCGTCGATAAACCAACTTAGTAAACTTGTTGAGTGGGATGATATAAAGGTTGAATCTGAGGGCTTTACTAGCTTCATACATAGCACTATGCAAAACATTACTTATGACAATGTTCTATCCTCAAATTCAAGCCAACTTGATGTGAATCATAACATTCCTCAAATACAAAATATTACTGGTTGTATGCTGCCACCTTACGATGACATTTGTGATATGGTAGATTTTAGTGGTCTTATTGATTGGGATAATATAGTAGCTGAACCTGAGGATTTTACTGTTGTAGAAGATGATTTTTTGTGTATTTAA 945 0.3513 MGRPKTNLKRIQNEKVRKTTFVHRKNGLSKKVSEFSSIFGAEVCLIVYDSDGSDIPMTFPENATTVQSMLKKYEHQKIETTLEEFGVKDYYANKKNLVEAEISRVRKEILKKKYPTSSPIFHNMEEEQLKAFIAFVDSKIEACNHMLKNMQQKDTCFVQNMAQDSDVCLHSSQDNVVMHNLPQMQHITDFMEPTNDDISEWIDFSDLSDLPPVSSINQLSKLVEWDDIKVESEGFTSFIHSTMQNITYDNVLSSNSSQLDVNHNIPQIQNITGCMLPPYDDICDMVDFSGLIDWDNIVAEPEDFTVVEDDFLCI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01396 314 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car01g01396 314 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car01g01396 314 PANTHER PROTEIN, PUTATIVE-RELATED 5 271 - -
Car01g01396 314 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Car01g01396 314 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car01g01396 314 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car01g01396 314 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car01g01396 314 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car01g01396 314 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Car01g01396 314 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Car01g01396 314 PANTHER MADS BOX PROTEIN 5 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01396 Car-Chr1 21518827 21520392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01396 7 161 Type I MADS-box Gene Family AT5G58890 35.088 9.54e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car01g01396 SRF-TF 2.6e-13 No_clan