Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01395 ATGAGTTGTTTGGCAACACCATCTTTTCTTGCTAATCAATTTATTCCATTTTCTACTGCTATTACTAATTCTGCTATGAGCTCCAAATTGGGAGCCAGTTTTCATAGAATATACAAAAGTAAAACCAAAGAAAAGTTCTGTCTGTCTTTCTCTAGGGATAATTATGAAGTTGGAAGTAATTTTGCAATCAAATTAAGCAGAGAAGTATCTTATTCCCAAACCCAACAAGAACATGGAACTTGGGAAGAACCAgatattgatagtgacagtgacattgagagtgaGTATGGTGATGAAGAAGATGAGAGCCTTGGATTTGAAAGTGATGGGGAAGAGGAAGAGACAAAGACTTCAGCTATTACCGGTGTTAATATTACCTCACAGGATGAGTATGAGGAGCAAATTAAGAAAGGTAGAAAGAGAAATATTGAAACAAAATCAATATTGCAACAAAATCCAACTCCTAACTTGAAAAATATATCATCTGAAAAATGGAGCCCACTGCACTCTCTTGCGCTATCAATGCAGATTAGTAGCATGGATAAGCTTCTTGAAAATGGTTATGATATTGATTTCCTTAATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAAGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGCAGATAATGAAGGTTGGACTCCATTGCATGTTGCCATTCAAAGCAGGAATAGAGATATTGCGAAAATTTTGTTAGTCAATGGTGTAGATAGGTTAACAAAAAATAAGGATGGAAAAACAGCACTGAATCTAAGCTTATGCTATGGGAAAGATTTCATGTCTTATGACCTTGCTAGATTAGTGAAGAATCTTGATAAAGATTGGTACACTCCAAGAAGCTTTCTCATAGCTCCAATCCAGTAG 1005 0.3473 MSCLATPSFLANQFIPFSTAITNSAMSSKLGASFHRIYKSKTKEKFCLSFSRDNYEVGSNFAIKLSREVSYSQTQQEHGTWEEPDIDSDSDIESEYGDEEDESLGFESDGEEEETKTSAITGVNITSQDEYEEQIKKGRKRNIETKSILQQNPTPNLKNISSEKWSPLHSLALSMQISSMDKLLENGYDIDFLNKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYNVADNEGWTPLHVAIQSRNRDIAKILLVNGVDRLTKNKDGKTALNLSLCYGKDFMSYDLARLVKNLDKDWYTPRSFLIAPIQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01395 334 ProSiteProfiles Ankyrin repeat profile. 258 290 IPR002110 GO:0005515
Car01g01395 334 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 76 322 - -
Car01g01395 334 ProSiteProfiles Ankyrin repeat profile. 229 254 IPR002110 GO:0005515
Car01g01395 334 SMART ANK_2a 258 288 IPR002110 GO:0005515
Car01g01395 334 SMART ANK_2a 163 192 IPR002110 GO:0005515
Car01g01395 334 SMART ANK_2a 196 225 IPR002110 GO:0005515
Car01g01395 334 SMART ANK_2a 229 257 IPR002110 GO:0005515
Car01g01395 334 MobiDBLite consensus disorder prediction 86 109 - -
Car01g01395 334 Pfam Ankyrin repeats (3 copies) 211 284 IPR002110 GO:0005515
Car01g01395 334 ProSiteProfiles Ankyrin repeat profile. 196 228 IPR002110 GO:0005515
Car01g01395 334 Gene3D - 128 316 IPR036770 -
Car01g01395 334 MobiDBLite consensus disorder prediction 74 134 - -
Car01g01395 334 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 76 322 - -
Car01g01395 334 ProSiteProfiles Ankyrin repeat region circular profile. 258 284 - -
Car01g01395 334 ProSiteProfiles Ankyrin repeat region circular profile. 229 254 - -
Car01g01395 334 ProSiteProfiles Ankyrin repeat region circular profile. 196 228 - -
Car01g01395 334 SUPERFAMILY Ankyrin repeat 161 324 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01395 Car-Chr1 21511442 21517152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01395 210 282 Ion Channels AT2G25600 44.156 5.94e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01395 - - lja:Lj0g3v0067589.2 427.557