Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01358 ATGGAACAGTTGAAATTGGATGCAAATTCTGAGGCCAAAGAGGATGGTCCTTCTCGGAACAAGTCAAAAAATAACAATGCAGTTAAATCTTCTGATAGTTTGAGAAGTAAGAAGATATCAGCTAGATGGGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGCTGAAGCATGTCGACCTATAATTGATGAAGCGCCTGTGTTTCATCCAACTATTGAAGAGTTTGAAGATACACTGAGTTATATAGCAAAGATACGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGACTCCACCTTGCCTTCTTAAGGAGAAAGATATATGGGAAAAGGCTGAATTTTCCACCCGCATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCCAAATCAGGAACATGTAGGAGAGTTTCCAATCCAGCTTCTGAAGCTAATAATGCTTCGGAAGCTGATGAGAAATATGGATTCCAATCAGGGTCGGACTTCACGTTTAAAGACTTTCAGAAATATGCTAAGTACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGAAGATGGAAAAATCGGTGAAAGTAACCACCAAAGGAGACGGGAGCCCTCGGAGGAGGAAATTGAAGGTGAATATTGGCGAATAGTTGAGCAACCAACTGATGAAGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCCATAAGTAGCGGTTATTTGGATCAGTATGCACTGTCTGGCTGGAATCTAAATAACTTCCCCCGACTGCCCGGTTCTGTTCTAAGTTTTGAAGGAAGTGACATCTCAGGAGTATTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTACACTGGGGTGACCCAAAGATATGGTATGGAGTACCTGGAAGCCGTGCTTCTGCTCTTGAACATGCAATGAAGAAGCACTTGCCTGATTTGTTTGAGGAGCAACCGAATCTACTCAATGATCTGGTTACTCAGTTATCTCCTTCAATTCTTAAATCTGAGAGAGTGCCTGTATATCGCACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCGAGGGCATACCACTCTGGTTTCAATTGTGGGTTCAACTGTGCAGAGGCAGTGAATGTCGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTTTACAGTTCACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGTTCAGCAATGGAAGCTATACGAGCCGTTGCAGAGTTAACTCTTCATGGAAAGGAAACTCCAAAAAATTTGAAATGGAGTACTGTCTGTGGGAAAGATGGAGTTCTTACTAAGGCATTTAAGGCACGAATAAAGATGGAAGAAGAGAGGCTAGGATGTGTTCCAACTCATTTTAAGTTTCTGAAAATGGGACATGACTTTGATTTGTATACAGAAAGAGAATGCTTCTCTTGCTTCTATGACCTGTACCTATCTGCTGTCGGTTGTGAGTGCTCTCCTGATAGATATTCTTGTCTTAAGCACGCTAGATTGTTCTGCTCATGTGAAATGGACAAAAGGTTTGTTCTGCTTCGGTATAATATGAATGAGCTAAACAAAATGCTTGAAGCACTTCAAGGAGATTCACTTGCTCTCGAGTTATGTGAAAATAAAAACTTCGGAATGGTTTCTGCTGAGGCCAATGAGGGTTGCATAGATAAACCGGAGGTGGAGAGAGACAAGGGTCTTGAAGAAGGGGAGAGCTCAGCTGGTTGCACAGGAACCAAGGATAATCATGTTACTTCAGAGCTAATACAATCTGAATCTTACCTTGTAACTGTTAGTGCACCAAATGGAAGTTTAGATAGTGATAATGACAATAAGATGGATGTAGACGAAGATAAGATGGACCAGGAAGGTTCTCTGGATTTAAATCTTGATGTTATATCAAGTGAAAATGAAAAGTATTTGCTGCATATCGCTGATAACCATCACAACAAGGGTGATTCGGTAGAGGAGAAAGTATGTTGTTCAGAGATCAAAAAGGAACAAGACGACATGAAACTTGTTGGTTTCAGTAATCCATCACACTCATTTTCTGATGAGAAGACAGAAGTTTCATCATGCTCAAGGGATGTTCACAGTTCTTGCACATCTGATGGTGGAAAATGTGAGGTGGATCTGCCAATGGTTTCAGATTCAAGAAAGAAACCCGAAAATGTATTTGAAAAAGAAGTTATAGACACCACAAATGCAAGTATATATTTGACACAGGAAAGCTGCTTAATGCAAATTTTTGGTACTTCTGTCAAGCCTACAAGTTTGGGATCTGTTGTTCATGGGAAGCTATGGTGCAGTAAGCATGCAATTTATCCAAAAGGATTCAAGAGTCGGGTTAATTTCATTAGTATCCTCAATCCAACAAGAATTTGTAGCTATGTTTCTGAAGTCATTGATGCTGGACTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGAATGTCCAAGTGTCGCTTTCACGGAAACCTCAGCAGATAAGTGCTGGAAATCAGTTCTGAAGAGACTACATGATGAAATCATGGAGCGACAGAGCCGAGGTGAACTTGAACTTCCTTCCGAAGAGCTTCTGAAAAGCATTAACGGTCATAGAATGTTTGGCTTCCTTTTGCCGTCCATAATTCAGGCCATTGAAGCTCAAGATCCAAGTCATCAGTGCGCAGAGTACTGGAATCACAAAGTTATCCCTACATCTCCAGGCAGCGTTATCGATAACTGTAATGACCTAAGTTGTTCAAGTAGTCCTTTAGATAATGTCAATACCAAAATTTTTGGTATCAATTTAATTGACCGGTCAAAGGACAACATAGAAGGAAGTTGTCATTCTCTTGAGGAGATGAAATCAATACTTCAAAAGGCAAGTCCCAATGAGCTATGCTCACTGCGCAAATTACTCGGCTCCAACGCACAGTGCTTTGAGTGGAGAATGGCATTGACATCAATGATGGATGAGATCCAGAAAGTTTTGTAG 3240 0.3932 MEQLKLDANSEAKEDGPSRNKSKNNNAVKSSDSLRSKKISARWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEACRPIIDEAPVFHPTIEEFEDTLSYIAKIRPQAEPYGICRIVPPACWTPPCLLKEKDIWEKAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRKNSKSGTCRRVSNPASEANNASEADEKYGFQSGSDFTFKDFQKYAKYFKECYFGLKDANEDGKIGESNHQRRREPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSISSGYLDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSRASALEHAMKKHLPDLFEEQPNLLNDLVTQLSPSILKSERVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSSQRRKTSLSHDKLLFGSAMEAIRAVAELTLHGKETPKNLKWSTVCGKDGVLTKAFKARIKMEEERLGCVPTHFKFLKMGHDFDLYTERECFSCFYDLYLSAVGCECSPDRYSCLKHARLFCSCEMDKRFVLLRYNMNELNKMLEALQGDSLALELCENKNFGMVSAEANEGCIDKPEVERDKGLEEGESSAGCTGTKDNHVTSELIQSESYLVTVSAPNGSLDSDNDNKMDVDEDKMDQEGSLDLNLDVISSENEKYLLHIADNHHNKGDSVEEKVCCSEIKKEQDDMKLVGFSNPSHSFSDEKTEVSSCSRDVHSSCTSDGGKCEVDLPMVSDSRKKPENVFEKEVIDTTNASIYLTQESCLMQIFGTSVKPTSLGSVVHGKLWCSKHAIYPKGFKSRVNFISILNPTRICSYVSEVIDAGLLGPLFKVTMEECPSVAFTETSADKCWKSVLKRLHDEIMERQSRGELELPSEELLKSINGHRMFGFLLPSIIQAIEAQDPSHQCAEYWNHKVIPTSPGSVIDNCNDLSCSSSPLDNVNTKIFGINLIDRSKDNIEGSCHSLEEMKSILQKASPNELCSLRKLLGSNAQCFEWRMALTSMMDEIQKVL 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01358 1079 MobiDBLite consensus disorder prediction 686 711 - -
Car01g01358 1079 Pfam F/Y-rich N-terminus 844 888 IPR003888 GO:0005634
Car01g01358 1079 SMART fyrc_3 897 989 IPR003889 GO:0005634
Car01g01358 1079 Gene3D - 838 977 - -
Car01g01358 1079 MobiDBLite consensus disorder prediction 162 202 - -
Car01g01358 1079 Pfam JmjC domain, hydroxylase 337 453 IPR003347 -
Car01g01358 1079 MobiDBLite consensus disorder prediction 168 185 - -
Car01g01358 1079 ProSiteProfiles FYR domain FYRC motif profile. 893 983 IPR003889 GO:0005634
Car01g01358 1079 PANTHER LYSINE-SPECIFIC DEMETHYLASE 84 1077 - -
Car01g01358 1079 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 84 1077 - -
Car01g01358 1079 ProSiteProfiles JmjC domain profile. 304 470 IPR003347 -
Car01g01358 1079 ProSiteProfiles FYR domain FYRN motif profile. 833 891 IPR003888 GO:0005634
Car01g01358 1079 MobiDBLite consensus disorder prediction 696 711 - -
Car01g01358 1079 Gene3D Cupin 82 454 - -
Car01g01358 1079 Pfam C5HC2 zinc finger 560 612 IPR004198 -
Car01g01358 1079 MobiDBLite consensus disorder prediction 1 35 - -
Car01g01358 1079 ProSiteProfiles JmjN domain profile. 96 137 IPR003349 -
Car01g01358 1079 MobiDBLite consensus disorder prediction 1 20 - -
Car01g01358 1079 MobiDBLite consensus disorder prediction 646 669 - -
Car01g01358 1079 SMART cupin_9 304 470 IPR003347 -
Car01g01358 1079 SMART JmjN_1 95 136 IPR003349 -
Car01g01358 1079 SMART fyrn_3 847 891 IPR003888 GO:0005634
Car01g01358 1079 Pfam jmjN domain 97 130 IPR003349 -
Car01g01358 1079 Pfam F/Y rich C-terminus 895 982 IPR003889 GO:0005634
Car01g01358 1079 SUPERFAMILY Clavaminate synthase-like 213 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01358 Car-Chr1 19657570 19666408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01358 85 657 JUMONJI Transcription Factor Family AT1G30810 62.738 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car01g01358 JmjC 2e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01358 - - gmx:100781830 1511.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01358 01 19657570 19666408 Car01g01358 01 19657570 19666408 ECH