Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01356 ATGCGGAGCCACATTATGTGTAGTGGGTGTAGGAACATCTTGCTTTACCCTAGAGGAGCAAGCAATGTTTGCTGTGCTTTGTGCAACACAATTACCCCTGTTACTCCTCCCGGAATGGAAATGTCACAACTATATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGCGGAGCTACTAGCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTACCAGAATCTAATCAATTGAGCCATATTCATTGTGGGAACTGCCGAACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCAATTTGTCATTATATTACTAATGTCAGTATGAACAATGGAAGGCTCCCAGTTCCTACACGGAGACCTAATGAAACAACCAGCTCCGAAACGTTTTCATATGATCCTATTACCCTGCAGTCAAGGCCCCGCTTTGAAAGCCAAACTGTAGTAGTAGAAAATCCCATGTCTGTTGATTCAAGTGGGAAATTGGTAAGCAATGTCGTCGTGGGCGTTACAACAGAGAAGAAATGGTGA 543 0.4365 MRSHIMCSGCRNILLYPRGASNVCCALCNTITPVTPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCNTINLVPESNQLSHIHCGNCRTTLMYPYGAPSVKCAICHYITNVSMNNGRLPVPTRRPNETTSSETFSYDPITLQSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKKW 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01356 180 PANTHER PROTEIN LSD1 1 177 IPR040319 -
Car01g01356 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Car01g01356 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Car01g01356 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Car01g01356 180 Pfam LSD1 zinc finger 84 108 IPR005735 -
Car01g01356 180 Pfam LSD1 zinc finger 46 70 IPR005735 -
Car01g01356 180 Pfam LSD1 zinc finger 7 31 IPR005735 -
Car01g01356 180 PANTHER LSD1-LIKE PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01356 Car-Chr1 19560904 19568019 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Car01g01356 zf-LSD1 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01356 - - gmx:100776394 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01356 01 19560904 19568019 Car01g01356 01 19560904 19568019 ECH