Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01348 ATGAATATGGATTCTAGATTTGAGGGGAAAAATCAGTATTTATATGAACCAGTAGTGCCTGAGATGAAGAGTGTTGGTAAGGTGAGTTTGGATTGGAATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGACTTCAGTGCCAACAGATTGTAGAAATCGGCAATTATTCCCGGTTGACCCCGAAATACCTACAAATATTGTTGATGGTTCTATCAATTTGACTTGTGGCGAAGGAAGTAGAGAATTGGAGAAGAGGAGGAGGGGTGTTGTTGTTGATGAAGGGTTGGAGATGGATGATGAAATTGGTTCTCTTCATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGGGATGAAAAAAGTGGAAAGAAGACAAAGATTACATCTGTGACTACTTCGATGAGTCGGGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAATGCGAAGGATTATCATCGTCGCCACAAAGTTTGTGATGTGCATTCTAAGGCTAGCAAGGCGCTGGTGGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGAAAGAGAAGTTGTCGTAGGCGTCTTGCAGGTCACAATAGGAGGAGGAGGAAGACACATCCTGATGCTGCTTTAGTTAATGGAGACTCTCCTAATGAAGAAAGGGGAAGTAGCTATATTTTGATGAGTCTACTAAGGCTACTCTCCAATATGCATTCAAACGGCCCAGATCATATGAGAAACATCGATGTTCTATCTCGTCTGATTGGGAACCTGGCAAGTGTTGCTGGTACGATAAACGGAGGAAACGTAGCTGGTATGATAAATGGAAGAAATACTGCATCCCTATTGGAGGTACCTCAAGATTTAGTAAAAGCTGGAACATCTGGAGCTGCACAGAATGTTCCAAACACAAACTCAAATGGTCCTGAACCATCCAGACCTTTTGATTCTTCTACCGAAACGAGAAACGGTCTAATCCGTCAAGACCCTCCAGAGTCTAGGTCACCGTGTGAGACAGTTCCTACCAATCAAACAGTGCAAAAATGTATACCTTCGGGATGTGTCGGAGTAGGATGTTCAAATTCTCGTTTGATACCACAGTCCTCAAATGTACTTCCTTCAAGGGGCGGCCTTCCACCCCGACCAGTTGCCGCAGAGACTACAGCTGGAAGAAACAGATTGACTAATATCGACCTGAATAATGTATACAATGACGTGCAGGATTCTATGGAGAACCCCGGAAATTCTCCTCATCAACCTTATCATCCTTCATCGGTACAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCGGATTCAACCTCTACTCAGTCACCATCTAGTTCTAGCGGTGAAGGCCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAATGATTTCCCCGTTGTTCTTCGATCACAGATCCTTAACTGGTTATCCCACAGTCCGACAGAGATAGAGAGCTATATAAGGCCTGGCTGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGGATGAGCTATGCTATAATCTTGGATCCAGCTTGAGAAAGCTTATTGCTTCATCAAATGATTCTCTTTGGAGTACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAAGTGGTCTTAGATGTTCCGTTGCATCTTGGAAGCCCACAAAGTTGTCAGATATTGTGCGTGAAACCACTTGCTGTTTCTGCAAGTGCAAATGTAAAATTTATTGTGAAAGGGTTCAACCTTTTCCTGTCTAGTGCAAGGTTGCTCTGCGCACTTGAGGGGAAGTATCTGCTACAGGATAGGTGTTATGATTTGATTGATGGTGGTGATGCAGCCATTGGAGATCATGAGCTTCAGCAACTCAGCTTCTCTTGTCATATACCGAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAACGGTTTTGGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGGAAGAAATTTGTTCAGAGATATGTACGCTAGAGACTGTCATTGAGGCAGCCGAGACTGCCGACGACATCCAGATCAAAACCAAATTAATGGAAGAAAAGACTCGAGCAATGTATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTAAAATTTAGGCTAGGGCCAATGGCACCTGTTCAAGATCGCTTTCATTTTAATCGGTATACATCGCTTGTTGGCTTCTCTATGGACCATGATTGGTGTGCTGTGACAAAAAAACTATTGGACATAATCTTTGAGGGTGAAGTTGATACCGGAGAACATACCTCTGTGGAGCTTGCATTGTTAAACATGAGTCTTTTACACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTAGAACTACTGTTAAACTTTGTGCCGGTTAAAGCGTCCGATGGTGGAGACAGTAAAGAGATGCAAGTCAACAAGTCCACTGACAGATTCTTGTTTAGACCCGATACCGTTGGGCCTGCTGGGTTGACTCCCCTACATGTTGCAGCAAGTATGAATGGCTATGAGAATGTGTTGGATGCATTAACTGATGATCCGGGAATGGTCGGACTCGAAGCATGGAAAAATGCAAAGGACGGTACAGGTTTGACACCAAATGACTATGCATCTCTTAGGGGCCACTACTCCTACATTCAACTTGTGCAGAGAAAAACAAGCAAGAACTTCCAAACTCAACACGTGCTCGACATCCCAAGCACGCTCGTTGACGCAAACATGAAGAAGCAATCAGATGGCCCTAAATCATCAAAAGTTTCAAGTTTTCATACAGAGAAGGTTGCAACAACATCAACACCAAATCATTGTGGTCTCTGTCAGCAGAAGTTGGCCTACGGCGGTGGCCGCATGAGGAGGGCACTTGTTTATCGACCGGCGATGCTGTCAATGGTTGCCATTGCAGCTGTTTGTGTCTGTGTGGCTCTGCTCTTCAAAAGCTCACCAAAAGTTTACTATGTTTTCCAACCTTTCAGCTGGGAATCATTGGAGTATGGATCAATCTAA 3105 0.4345 MNMDSRFEGKNQYLYEPVVPEMKSVGKVSLDWNLNDWRWDGDLFTAKQLTSVPTDCRNRQLFPVDPEIPTNIVDGSINLTCGEGSRELEKRRRGVVVDEGLEMDDEIGSLHLNLGGQVYPIMEGDEKSGKKTKITSVTTSMSRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAALVNGDSPNEERGSSYILMSLLRLLSNMHSNGPDHMRNIDVLSRLIGNLASVAGTINGGNVAGMINGRNTASLLEVPQDLVKAGTSGAAQNVPNTNSNGPEPSRPFDSSTETRNGLIRQDPPESRSPCETVPTNQTVQKCIPSGCVGVGCSNSRLIPQSSNVLPSRGGLPPRPVAAETTAGRNRLTNIDLNNVYNDVQDSMENPGNSPHQPYHPSSVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDFPVVLRSQILNWLSHSPTEIESYIRPGCIILTICLRLENSAWDELCYNLGSSLRKLIASSNDSLWSTGWIYTRVRHSVAILYNGQVVLDVPLHLGSPQSCQILCVKPLAVSASANVKFIVKGFNLFLSSARLLCALEGKYLLQDRCYDLIDGGDAAIGDHELQQLSFSCHIPNMTGRGFIEVEDNGFGSCSFPFIVAEEEICSEICTLETVIEAAETADDIQIKTKLMEEKTRAMYFVQEMGWLLHRIRVKFRLGPMAPVQDRFHFNRYTSLVGFSMDHDWCAVTKKLLDIIFEGEVDTGEHTSVELALLNMSLLHKAVKRNCRPMVELLLNFVPVKASDGGDSKEMQVNKSTDRFLFRPDTVGPAGLTPLHVAASMNGYENVLDALTDDPGMVGLEAWKNAKDGTGLTPNDYASLRGHYSYIQLVQRKTSKNFQTQHVLDIPSTLVDANMKKQSDGPKSSKVSSFHTEKVATTSTPNHCGLCQQKLAYGGGRMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01348 1034 MobiDBLite consensus disorder prediction 310 356 - -
Car01g01348 1034 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 16 1033 - -
Car01g01348 1034 SUPERFAMILY SBT domain 144 225 IPR036893 GO:0003677|GO:0005634
Car01g01348 1034 MobiDBLite consensus disorder prediction 310 343 - -
Car01g01348 1034 SUPERFAMILY Ankyrin repeat 801 915 IPR036770 -
Car01g01348 1034 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 1033 IPR044817 GO:0003677
Car01g01348 1034 ProSiteProfiles Zinc finger SBP-type profile. 143 220 IPR004333 GO:0003677
Car01g01348 1034 MobiDBLite consensus disorder prediction 210 233 - -
Car01g01348 1034 MobiDBLite consensus disorder prediction 384 474 - -
Car01g01348 1034 Pfam SBP domain 146 219 IPR004333 GO:0003677
Car01g01348 1034 MobiDBLite consensus disorder prediction 404 474 - -
Car01g01348 1034 Gene3D - 137 207 IPR036893 GO:0003677|GO:0005634
Car01g01348 1034 Gene3D - 773 935 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01348 Car-Chr1 19218054 19227057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01348 3 1033 SBP-box Gene Family AT3G60030 45.005 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car01g01348 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01348 - - gmx:100776125 1541.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01348 01 19218054 19227057 Car01g01348 01 19218054 19227057 ECH