Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01319 ATGATGTCATTGCTCAAAGAGCTTCTCACACAGGTGGACCCCATTTCAGACACGTTCCCGCCACAAGGTCAATTTCCTTCGTGGGTTAAGCGAGAAGATAGGAATCTCCTACAAGCAAATGGGGTGCGTGTGAATGTTGTTGTTGCTGCTGATGGGAGTGGAAATTTTACAAAGGTGATGGATGCGGTGAGTGCAGCACCTGATTATAGCATGAAACGCTTTGTGATATATATAAAGAAAGGTGTTTATACTGAAAATGTTGAAATTAAGAATAAGAAATGGAATCTCATGATGGTTGGAGATGGTATGAATGCCACTATTATTTCTGGTAATCGGAGCTTCGTTGACGGATGGACTACATTTCGGTCGGCTACCTTTGCTGTGAGTGGTAGAGGATTCATAGCACGAGACATCAGCTTCCAGAATATTGCGGGTCCTGAGAAACACCAAGCAGTGGCACTAAGATCCGACTCTGACCTCTCTGTATTTTATCGATGTGGGATTTTTGGTTATCAAGACAGTCTTTATACTCACACCATGCGCCAATTTTATAGAGAATGTAATATAAGTGGTACAGTGGATTTTATCTTCGGAGATGCTGCAGCTATTTTTCAAAATTGCCAAATACTAGTCAAGAAAGGGTTACCAAATCAAAAGAACACAATCACAGCTCAAGGACGAAAAGATCCCAACGAACCAACTGGTTTCTCAATTCAATTCTGCAACATCTCTGCTGATTATGATCTTCTTCCATCAGTTAATTCTACGTGGACATATCTTGGCAGACCGTGGAAACCATATTCAAGAACAATTTTCATGCAATCTTACATAAGTGATGTAGTAAGGCCAAAAGGGTGGCTAGAGTGGAATGGAAATTTCGCTCTAGATACATTGTACTATGCAGAGTACATGAATTATGGATATGGAGCTGAATTAAGTCAACGAGTAAAATGGCCAGGGTATCACATTATGAATGATTCTAGTCAAGCTAATAATTTTACAGTTACCGAATTTATTAAGGGGAATCTATGGTTACCCACCACAGGTGTAACATTCACTGCCGGACTAGGAGTTTAA 1077 0.4039 MMSLLKELLTQVDPISDTFPPQGQFPSWVKREDRNLLQANGVRVNVVVAADGSGNFTKVMDAVSAAPDYSMKRFVIYIKKGVYTENVEIKNKKWNLMMVGDGMNATIISGNRSFVDGWTTFRSATFAVSGRGFIARDISFQNIAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECNISGTVDFIFGDAAAIFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNISADYDLLPSVNSTWTYLGRPWKPYSRTIFMQSYISDVVRPKGWLEWNGNFALDTLYYAEYMNYGYGAELSQRVKWPGYHIMNDSSQANNFTVTEFIKGNLWLPTTGVTFTAGLGV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01319 358 Pfam Pectinesterase 45 342 IPR000070 GO:0030599|GO:0042545
Car01g01319 358 PANTHER PECTINESTERASE 17 356 - -
Car01g01319 358 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 17 356 - -
Car01g01319 358 ProSitePatterns Pectinesterase signature 2. 189 198 IPR033131 -
Car01g01319 358 Gene3D - 43 358 IPR012334 -
Car01g01319 358 SUPERFAMILY Pectin lyase-like 43 355 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01319 Car-Chr1 18311351 18315342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01319 24 356 Carbohydrate Esterase AT3G43270 74.251 0.0 551