Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01317 ATGGAAAAAATAAGTTGGGCACATTCTACACAACAACATTTGACTGTAGAGGAAGTGTTGCAGGATGTTACATGTATTCTGCAGTTTGAGCTCACCAAAGTTAATGGTGTTGACGACTTTTGTTTCTCCAACTCCATTTCAACGTGTTTGAAATTGCTAGACTTGTCCGTCAAAGAACTCGCTTGGTGTAGATTTGCTGTTGAGAGTTCGAAAGGAAAATATAATGGTACTGGTAACCTTGGTCATGATTTACGGACAAGGTTAATGGAGGTGCAACCAATCTCTTACCACTCTGCCAACAAGAGCCGATTTCTTTCTTGGGTAGCCCGAAGCGACAAAAAGCTATTACAGACAGATGCACCTCATATTTTTGATGTTGTAGTTGCAGCTGATGGTACTGGAGATTTTACTATAGTGATGGAGGCGGTGCATGCAGCCCCAAGCTCTAGTGAGAAGCGCTATGTCATATTCATAAACAGGGGAGTTTATATGGAGAATGTTGAGGTTGAGTTTGACAAGAAGAACCTCATGATGATTGGAGAGGAGGAAGTGTTGCAGGATGTTACATGTATTCTGCAGTTTGAGCTCACCAAAGTTAATGGTGTTGACGACTTTTGTTTCTCCAACTCCATTTCAACGTGTTTGAAATTGCTAGACTTGTCCGTCAAAGAACTCGCTTGGTGTAGATTTGCTGTTGAGAGTTCGAAAGGAAAATATAATGGTACTGGTAACCATGGTCACGATTTACGGACATGGTTAATTGCAGCTGATGGTATTGGAGATTTTACTACAGTGATGGAGGTGGTGCATGCAGCCCCAAGCTCTAGTGAGAAACGCTATGTCATATTCATAAAGAGGGGAGTTTATATGGAGAATGTTGAGGTTGAGTTTGACAAGAAGAACCTCATGATGATCGGAGAAGGTGTCATGGGTGGAGGTTTCATTGCACGGGATATGTCCTTTAGAAATACGGCTGGACCTATGGGTGAACAAGCGGTGGCATTAAAATCTCTTTCTGACTTCTCAGTATTTTATCGATGTGGAATTTTTGGCTATCAAGATAGCTTATATGCGCATAGCAACCGCCAATTCTATAGAGACTGCAAAATCAGTGGCACGATGGACTTTATCTTTGGATATGCCATTGCAGTTTTTCAAAATTGTAAACTATTAGTCAAAAACGGATTGCCGAAACAAAGCAATACTATCACCGCTCAGGGAGGAAAAGTCAATGGAGACTTAACTGGTTTCTCATTTCAGTTTTGCAACATATCTGCAGACTTTGACCTTTTACCTTTTGTTAAATCAACCTCAACATTCTTTGGAAGACCGTGGCAGTCATATTCTACAACGATTTTTATGCAGTCTTACCTAAGTGATGTTTTGAGTCCAAAAGGATGGTTAGGGTGGAACAAATCCCAATATTTAGACACATTGTATTATGCTGAGTATAAGAATTATGGACCAGGAGCAAAGATACAGGGCAGAGTTAAATGGAAACAGTATCATATTCTAAATGATTATAGGCAGACAAATAACTTCACAGCGGCCCACTTCATTTTAGGGAACCTATGGTTATCTTCAACGGGTGTACCATTCACTCTTGGATTTGGGAGTCATACTTGA 1626 0.4053 MEKISWAHSTQQHLTVEEVLQDVTCILQFELTKVNGVDDFCFSNSISTCLKLLDLSVKELAWCRFAVESSKGKYNGTGNLGHDLRTRLMEVQPISYHSANKSRFLSWVARSDKKLLQTDAPHIFDVVVAADGTGDFTIVMEAVHAAPSSSEKRYVIFINRGVYMENVEVEFDKKNLMMIGEEEVLQDVTCILQFELTKVNGVDDFCFSNSISTCLKLLDLSVKELAWCRFAVESSKGKYNGTGNHGHDLRTWLIAADGIGDFTTVMEVVHAAPSSSEKRYVIFIKRGVYMENVEVEFDKKNLMMIGEGVMGGGFIARDMSFRNTAGPMGEQAVALKSLSDFSVFYRCGIFGYQDSLYAHSNRQFYRDCKISGTMDFIFGYAIAVFQNCKLLVKNGLPKQSNTITAQGGKVNGDLTGFSFQFCNISADFDLLPFVKSTSTFFGRPWQSYSTTIFMQSYLSDVLSPKGWLGWNKSQYLDTLYYAEYKNYGPGAKIQGRVKWKQYHILNDYRQTNNFTAAHFILGNLWLSSTGVPFTLGFGSHT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01317 541 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 104 182 - -
Car01g01317 541 PANTHER PECTINESTERASE 104 182 - -
Car01g01317 541 Gene3D - 81 204 IPR012334 -
Car01g01317 541 SUPERFAMILY Pectin lyase-like 251 536 IPR011050 -
Car01g01317 541 Gene3D - 249 537 IPR012334 -
Car01g01317 541 PANTHER PECTINESTERASE 254 309 - -
Car01g01317 541 PANTHER PECTINESTERASE 15 89 - -
Car01g01317 541 ProSitePatterns Pectinesterase signature 1. 276 295 IPR018040 -
Car01g01317 541 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 183 256 - -
Car01g01317 541 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 15 89 - -
Car01g01317 541 PANTHER PECTINESTERASE 309 537 - -
Car01g01317 541 SUPERFAMILY Pectin lyase-like 125 186 IPR011050 -
Car01g01317 541 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 254 309 - -
Car01g01317 541 PANTHER PECTINESTERASE 183 256 - -
Car01g01317 541 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 309 537 - -
Car01g01317 541 Pfam Pectinesterase 309 523 IPR000070 GO:0030599|GO:0042545
Car01g01317 541 Pfam Pectinesterase 253 308 IPR000070 GO:0030599|GO:0042545
Car01g01317 541 Pfam Pectinesterase 125 183 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01317 Car-Chr1 18269675 18274793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01317 253 539 Carbohydrate Esterase AT3G43270 53.846 3.65e-116 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01317 K01051 - gmx:100798620 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00415 07 3660586 3663082 Car01g01317 01 18269675 18274793 PCT