Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01315 ATGTTTTTCATTTTCATTTTCTTTTGCACTCAGTTTGATTCTTCTACTGTTGGCTTTAGTCTAAATAGTCTAAAGAGACTAGAGTGTTTGAATGTGACTCCTTATGAGTTTGTTGTTTCCTTGAAAACTGTAGAGCATGTGTTGCAGGATGTTACATCTATTCTGCAGTTTGAGCTCACCCATGTTAATGGTGTTGACGACTTTCGTCTCTCTAACGCCATTTCAACATGTTTGAAATTGCTAGACTTGTCTGTCAAAGAACTCGATTGGTGTAGATTTGTTGTTGAGAGTTCGAAAGGAAAATATAATGGTACTGGTAACCTTGGTCATGATTTACGGACATGGTTAAGTGATATTCATGCTAATAGCGACACATGCATGGATGAACTTAAAGAAACTAGTGTTAACATGAATGATAAAATATCCACAAAAATTGACAAGGTCGATTCCCTGATTTATGATCTCCTCATCAAAGTGGAGGTGCAACCAATCTCTGACCACTCTGCCAACAAGGGCCGATTTCCTTCTTGGGTAGTCCGAAGCGACAAAAAGCTATTGCAGACAAATGCACCTCATATTTTTGATGTTGTAGTTGCAGCTGATGGTACTGGAGATTTTACTACAGTGATGGAGGTGGTGCATGCAGCCCCAAGCTCTAGTGAGAAGCGTTATGTCATATTTATAAAGAGTAAAGTTTATATGGAGAATTTTGAGGTTGACAATGATTGGAGAGGGTATGGATACAACTATTATCTCTAG 759 0.3834 MFFIFIFFCTQFDSSTVGFSLNSLKRLECLNVTPYEFVVSLKTVEHVLQDVTSILQFELTHVNGVDDFRLSNAISTCLKLLDLSVKELDWCRFVVESSKGKYNGTGNLGHDLRTWLSDIHANSDTCMDELKETSVNMNDKISTKIDKVDSLIYDLLIKVEVQPISDHSANKGRFPSWVVRSDKKLLQTNAPHIFDVVVAADGTGDFTTVMEVVHAAPSSSEKRYVIFIKSKVYMENFEVDNDWRGYGYNYYL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01315 252 CDD PMEI-like_4 2 156 - -
Car01g01315 252 Pfam Plant invertase/pectin methylesterase inhibitor 40 147 IPR006501 GO:0004857
Car01g01315 252 PANTHER PECTINESTERASE 32 162 - -
Car01g01315 252 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 32 162 - -
Car01g01315 252 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 159 IPR035513 -
Car01g01315 252 Gene3D - 193 246 IPR012334 -
Car01g01315 252 Pfam Pectinesterase 195 242 IPR000070 GO:0030599|GO:0042545
Car01g01315 252 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 139 IPR035513 -
Car01g01315 252 PANTHER PECTINESTERASE 170 240 - -
Car01g01315 252 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 170 240 - -
Car01g01315 252 SUPERFAMILY Pectin lyase-like 195 242 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01315 Car-Chr1 18250418 18251553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01315 1 239 Carbohydrate Esterase AT3G43270 37.302 1.67e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01315 K01051 - gmx:100801813 190.274