Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01313 ATGGCTCCCTTATGTCATAAACTCTTCCTCCTTCTTTTTCCACTCCTCTTCTCACTCACTCTATCTCTCAACACAAACACTTCCACAACCACAACATTAAATCCCAAACTCACTTCCTTAAAATCTTTTTGCACAACAACACCATACCCAAAACTTTGTTTCAACTCATTAAAACTATCCATTTCAATAAACATAAATCCAAACATCATAAGCTACCTCCTTCAATCACTTCAAGTAGCAATATCAGAAACTACAAAGCTCTCTAATCTTTTCCACAATGTTGGTCACACAAACATCATAGAAAACCAAAAAGGTTCAATCCAAGATTGCAAGGAACTTCATCAATCCACTTTGGTTTCATTGAAAAGATCATTATCTGGAATTCGTTCTGAAAACAAAAGAAAGATAGCTGATGCTAGAACATACTTAAGTGCAGCACTTACCAACAAAAACACATGTTTAGAAGGACTTGATTCTGCTTCTGGTAACCTTAAACAAGATCTTGTAAATTCTGTTATTGATACTTACAAACATGTAAGTAATTCTCTTTCTATGCTCTCTAAACCTGGATTGGTAGCTCCAAATCAAAAGGGTCATAAGAATCAAATGAATGATCCAAAATGGTTTTCAAAAAATGGTATTTTGAAAACTTTAGATTTGGATGATTATGACCCAAATGAAGTGCTTGTTGTGGCTGCAGATGGAACTGGAAACTTTAGCACAATCAATGATGCTTTAAACTTTGCTCCAAATAATAGCATGATTAGGATAGTGATTTATGTGAAAGAAGGTGTTTATGATGAAAATGTTGAAATACCAAGTTATAAGAGTAACATTGTTATGCTTGGTGATGGAAGTGATGCTACTGTCATCACTGGGAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACTTTAGCTGTATCTGGTGATGGTTTCCTTGCAAGAGACATAGCATTTGTGAACAGAGCAGGTCCAGAGAAACACCAAGCAGTAGCCTTAAGAGTAAACGCAGATTTAACAGCATTTTACAGGTGTGCAATTTATGGTTATCAAGACACACTTTATGTTCACTCATTTAGACAATTCTATAGAGAGTGTGACATTTATGGTACCATAGATTTCATATTTGGTAATGCAGCAGTAGTTTTACAAGAATGTAACATTATATCAAGAATGCCATTACCTGACCAATTTACTGTCATCACTGCACAATCAAGAGATAACCCAGATGAATACACAGGAATCTCAATCCAAAATTGTTCGATTTTAGCGACGGACGAACTTTATTCAAATTCTAGTAGAATCAAGAGTTACCTTGGAAGGCCATGGAGGGTTTATTCTAGAACTGTTTTTATTGAGTCTTATATTGATGACTTTATTGATCAAAAGGGTTGGACAAAATGGTCAAATGATCAAGATTTGGATACTTTGTTTTATGGTGAGTATGAGAATTATGGACCTGGTTCAAAGATTGATAATCGTGTTGAATGGGTTGGTTATCATTTAATGGATTATAACGATGCTTATAATTTCACTGTTTCAGAGTTTATTAGTGGTGATGAATGGCTTGAATATACTTCAGTTCCTTATGATGATGGGATTTGA 1617 0.3494 MAPLCHKLFLLLFPLLFSLTLSLNTNTSTTTTLNPKLTSLKSFCTTTPYPKLCFNSLKLSISININPNIISYLLQSLQVAISETTKLSNLFHNVGHTNIIENQKGSIQDCKELHQSTLVSLKRSLSGIRSENKRKIADARTYLSAALTNKNTCLEGLDSASGNLKQDLVNSVIDTYKHVSNSLSMLSKPGLVAPNQKGHKNQMNDPKWFSKNGILKTLDLDDYDPNEVLVVAADGTGNFSTINDALNFAPNNSMIRIVIYVKEGVYDENVEIPSYKSNIVMLGDGSDATVITGNRSVVDGWTTFRSATLAVSGDGFLARDIAFVNRAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECNIISRMPLPDQFTVITAQSRDNPDEYTGISIQNCSILATDELYSNSSRIKSYLGRPWRVYSRTVFIESYIDDFIDQKGWTKWSNDQDLDTLFYGEYENYGPGSKIDNRVEWVGYHLMDYNDAYNFTVSEFISGDEWLEYTSVPYDDGI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01313 538 CDD PMEI-like_3 42 189 - -
Car01g01313 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Car01g01313 538 Gene3D - 224 538 IPR012334 -
Car01g01313 538 SUPERFAMILY Pectin lyase-like 226 535 IPR011050 -
Car01g01313 538 SMART PMEI_2 35 185 IPR006501 GO:0004857
Car01g01313 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 188 IPR035513 -
Car01g01313 538 Pfam Pectinesterase 229 524 IPR000070 GO:0030599|GO:0042545
Car01g01313 538 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Car01g01313 538 ProSitePatterns Pectinesterase signature 1. 253 272 IPR018040 -
Car01g01313 538 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Car01g01313 538 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 187 IPR006501 GO:0004857
Car01g01313 538 PANTHER PECTINESTERASE 7 537 - -
Car01g01313 538 PANTHER PECTINESTERASE 7 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01313 Car-Chr1 18182784 18185578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01313 32 538 Carbohydrate Esterase AT2G26440 65.000 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01313 - - gmx:100776969 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01313 01 18182784 18185578 Car01g01313 01 18182784 18185578 ECH