Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01312 ATGGCGTTCCAAGATTTCGATCTTGTATCAGAAAGGAGAAAAAGCGCCGCGAAACTGCACCTCAGGAAGAAGATTTTGGTCGGTGTAACTTCTGTCATTCTCCTTGCATGTGTTATAGCAGCAGCAACATTTGTTATTGTCAAAAGGTCAGGACCAGAAGATGAGAAACCCGTTCCAACTGCAGCATCTGAAGCCGCACGCGTCGATAAATACTCGAGGCTTGTGAAAATGTTGTGCAGCAGTTCAGAATACAAGGATAAATGTGAAACCACACTCACTGAGGCATTGAAAAAAGATCCTAAATTGTCAGAGCCAAAGGATCTTTTATTGGTTTCCATGATAATTGCTGATAATGAGATCAACAAAGCCTTCAACGAAACAGCAAACATGAAATTTGCTTCCGACGAAGAAAAGGGAGCTTATGACGATTGTAAACAGTTGTTTCAGGATGCTAAAGAAGAAATGGGATTCTCAATCACTGAAGTTGGTAATGTTGATGTTGGCAAAATTTCTTCAAAAGCACCTGAATTGAACAATTGGCTTAGTGCTGTTATGTCCTACCAACAAACTTGCATTGATGGTTTCCCTGAGGGTGAATTGAAGGAAAAATTGGAGAAGATGTTTGTTGAATCAAGAGAACTTGTCAGCAATTCACTTGCTGTTGTTTCACAGATTTCTTCAATCGTTAATGCTTTCCAAGGTGGATTCTCTGGATTCAAATTACCTTGGGATAAAACCGATGCACCTGCTCCCACTCCTGTTGTTCCTGGTGCACCTGCTGCCGATGTTGTTGGTGCTGCTCCTGCTGGTTCTCCTGGTGCTGCTCCTGTTGGTGCTCCCGGTGCTGCTCCAGTTTTAGCTTCTGGACCCGCTCCTGTTGGTGCTCCAGGTGCTGCCCCTGTTGCTTCTCCTCCTTCTTGGGCTACACCAGTTCTTGAGTTGCCTGGATCAACTGAGAAACCTACACCTAATGTCACCGTTGCTCAAGATGGTAGTGGAAACTTCAAAACCATCTCCGAAGCTTTGGCTGCTATTCCAACAACATACGAAGGAAGGTATGTTGTTTATGTTAAGGAAGGAGTCTACGATGAGTTGGTGACTGTCACCAAGAAAATGGTCAACCTTACCATGTATGGTGATGGAGGTTCAAAGAGTATCGTCACTGGCAACAAAAACTTCGTTGATGGAGTCAGAACTTTCCAAACTGCCTCATTTGTGGTACTTGGAGATGGATTCGTGGGAAGAGACATGGGATTCAGAAACACAGCCGGTGCCGAAAAGCATCAAGCCGTGGCAGCCAGAATCCAAGCAGATCGTGCAGTGTTTGTGAGCTGTAACTTTGAAGGTTTCCAAGACACTCTATACGCACAAACTCACAGACAATTCTACCGTGACTGTATCATTTCCGGAACCATCGATTTCATCTTTGGTGACGCTTCCGCAGTTTTCCAAAACTGCGAAATGGTTATCAGGAAGCCACTTGACAACCAACAAAACATTGTTACTGCTCAAGGAAGAATTGACAAACAAGAAAACACTGGATTTGTCCTTCAAAAGTGTGTGATTAAGGGTGATGTTGCACTTCTTCCAACAACCAAGAACTACCTTGGAAGACCATGGAAGGAATATTCAAGGACCATCATCATGGAAACTGAAATTGGAGCTTTGATTCAACCTGATGGTTGGTTACCTTGGGAGGGTGATTTTGCACTAAACACATTGTACTATGGTGAGTTCAATAACAATGGTGCTGGTGCTAACACTAATGCTAGGGTTAAGTGGATTGGACGCAAAGATATTAATAGGGATGAGGCTATTACTTATACCGTGGATCCTTTCTTACAAGGGTCATGGATCAATGGTACTGGTGTTCCAGCTCAATTGGGCTTGTACAATTGA 1899 0.4355 MAFQDFDLVSERRKSAAKLHLRKKILVGVTSVILLACVIAAATFVIVKRSGPEDEKPVPTAASEAARVDKYSRLVKMLCSSSEYKDKCETTLTEALKKDPKLSEPKDLLLVSMIIADNEINKAFNETANMKFASDEEKGAYDDCKQLFQDAKEEMGFSITEVGNVDVGKISSKAPELNNWLSAVMSYQQTCIDGFPEGELKEKLEKMFVESRELVSNSLAVVSQISSIVNAFQGGFSGFKLPWDKTDAPAPTPVVPGAPAADVVGAAPAGSPGAAPVGAPGAAPVLASGPAPVGAPGAAPVASPPSWATPVLELPGSTEKPTPNVTVAQDGSGNFKTISEALAAIPTTYEGRYVVYVKEGVYDELVTVTKKMVNLTMYGDGGSKSIVTGNKNFVDGVRTFQTASFVVLGDGFVGRDMGFRNTAGAEKHQAVAARIQADRAVFVSCNFEGFQDTLYAQTHRQFYRDCIISGTIDFIFGDASAVFQNCEMVIRKPLDNQQNIVTAQGRIDKQENTGFVLQKCVIKGDVALLPTTKNYLGRPWKEYSRTIIMETEIGALIQPDGWLPWEGDFALNTLYYGEFNNNGAGANTNARVKWIGRKDINRDEAITYTVDPFLQGSWINGTGVPAQLGLYN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01312 632 Pfam Plant invertase/pectin methylesterase inhibitor 74 220 IPR006501 GO:0004857
Car01g01312 632 SUPERFAMILY Pectin lyase-like 321 625 IPR011050 -
Car01g01312 632 ProSitePatterns Pectinesterase signature 2. 468 477 IPR033131 -
Car01g01312 632 PANTHER PECTINESTERASE 14 630 - -
Car01g01312 632 Pfam Pectinesterase 324 616 IPR000070 GO:0030599|GO:0042545
Car01g01312 632 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 227 IPR035513 -
Car01g01312 632 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 225 IPR006501 GO:0004857
Car01g01312 632 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 226 IPR035513 -
Car01g01312 632 CDD PMEI-like_3 78 227 - -
Car01g01312 632 Gene3D - 318 630 IPR012334 -
Car01g01312 632 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 630 - -
Car01g01312 632 SMART PMEI_2 70 221 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01312 Car-Chr1 18175966 18178317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01312 323 632 Carbohydrate Esterase AT2G26450 61.465 1.16e-141 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01312 - - gmx:100796485 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01312 01 18175966 18178317 Car01g01312 01 18175966 18178317 ECH
Car07g00413 07 3651979 3654422 Car01g01312 01 18175966 18178317 PCT