Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01307 ATGGCCTCTGCTTCTAATCTTAACTCCCTGGGAATGAGAAACACCAATTCTTCACCAAACCACTCTTCCTCGCACAACGTTCTCATAACCGTAACGGTTTTCGCCGTTACCGTTACTATTTTCCTTATTCTCTATTTCATCCTCCGTTACCGTTGCATTTCCCTCCGCCGCCGTTTCTCTCCGTCATCCTCCACAACTTCCACCTCCGGTAATAGAGTTTCGCCGGAGATAACTTCATCTTCCGTCGTCGATTCACTCCCGATGTTCTCCTTCTCTTCTATTACACGCCGATCTTCCTCCGCTGCCTCCGGTGACTGCGCCGTTTGTCTGTCGAAGTTCGAGCAGCACGATCTCCTCCGTCTCCTCCCTCTCTGCCACCACGCCTTTCATGTAGAATGCATCGACACTTGGCTCCGATCGAATCTCACTTGTCCTCTTTGCCGATCAGCCGTCGTTGCTTCCGAATCGGAGCTTATGAAGATTTGCCAGCCATCGTCCGCTTCTTCCGGAAACAGCTTCCGACTCGAGATAGGGAATGTAAGCAGCAGCCGCCGTGGAACCGCCGCATCTAACAATGTCGGGGAAACTGACCGGAGATCATACTCCGTTGGCGCGTTCGAGTATTTTGTCGACGAGGAAGCTGAGATTCCGTTCGGTCAAACTAATCGGAGAATTGTTTCCGGTGAGAAAGATGATGCACCGGCGATGGCGGTGGCAGTGGAGGTTCCGGTTGTTTCTCAGGCGAATTTGATCGGTGAAGGTAGCTGGTTGAAGGATTACGTTGATAGTCTCTCGAGTTTGATGTCGTTTAGAAATTCTGGAAGATTCTTCGGTGGGAGTTTTAGACGAAACGACGTCGTTGGCGTTGGAGATTTCGAAGTTGAAACTAATGGTTTTGGTGAAGAAATTACAGAAATGTTTCGATGGATTTCAGGTGTTTGA 942 0.4968 MASASNLNSLGMRNTNSSPNHSSSHNVLITVTVFAVTVTIFLILYFILRYRCISLRRRFSPSSSTTSTSGNRVSPEITSSSVVDSLPMFSFSSITRRSSSAASGDCAVCLSKFEQHDLLRLLPLCHHAFHVECIDTWLRSNLTCPLCRSAVVASESELMKICQPSSASSGNSFRLEIGNVSSSRRGTAASNNVGETDRRSYSVGAFEYFVDEEAEIPFGQTNRRIVSGEKDDAPAMAVAVEVPVVSQANLIGEGSWLKDYVDSLSSLMSFRNSGRFFGGSFRRNDVVGVGDFEVETNGFGEEITEMFRWISGV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01307 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 300 - -
Car01g01307 313 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Car01g01307 313 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 300 - -
Car01g01307 313 Pfam Ring finger domain 105 148 IPR001841 -
Car01g01307 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Car01g01307 313 MobiDBLite consensus disorder prediction 1 23 - -
Car01g01307 313 SUPERFAMILY RING/U-box 82 153 - -
Car01g01307 313 CDD RING-H2_PA-TM-RING 105 148 - -
Car01g01307 313 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01307 Car-Chr1 18037817 18039114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01307 81 235 C3H Transcription Factor Family AT2G18650 32.093 4.57e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01307 K10663 - gmx:100804962 294.278